Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d12f
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   2.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   7.4  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 74  SSDNPIYLLFITLFLNNNEKFY 139
           ++D+ I    I  F N N+KFY
Sbjct: 297 NNDDDIKSYLIQFFANKNQKFY 318


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
 Frame = +2

Query: 62  ILS*SSDNPIYLLFITLFLNNNEKFYIQH**KEIVFSTT-----VIQCHQVRNLD--PLK 220
           I S   +NP   +   +F NN  K Y +    E+ F+       V   H +  +D  P+K
Sbjct: 23  IASPQLNNPTLFMIGGVFSNNKSKKYFEQTLNELNFNLNYVNKGVTYKHTIIEMDSNPIK 82

Query: 221 TADHLSLFLIQ 253
           TA  +   LI+
Sbjct: 83  TALSVCKSLIE 93


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -2

Query: 437 CDMACRCMLDLVVNISMIACSSV 369
           C   C+C  D   N + + CS +
Sbjct: 761 CPAGCKCYNDRTWNTNAVDCSGL 783


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 402 SQYINDRLLVCTKALHGGPQ 343
           S Y N   L CT    GGPQ
Sbjct: 6   SMYNNVSPLQCTSPFLGGPQ 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,898
Number of Sequences: 438
Number of extensions: 3995
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)