Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d11r
(708 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 89 6e-19
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 85 7e-18
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 75 1e-14
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 71 2e-13
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 71 2e-13
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 66 6e-12
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 58 1e-09
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 56 4e-09
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 55 1e-08
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 52 8e-08
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 48 1e-06
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 45 1e-05
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 34 0.023
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 28 1.5
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 27 2.0
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 26 4.6
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 26 4.6
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo... 26 4.6
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 89.0 bits (211), Expect = 6e-19
Identities = 38/89 (42%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Frame = -2
Query: 479 YECSYPGCGKNYFKSSHLKAHARTHTGERPFRCAWPGCERRFSRSDELSRHKRTHTGEKK 300
+ C Y CGK Y + S L+ H RTH+ ERPF C + GC + F R L HKR HT K
Sbjct: 23 FHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKP 82
Query: 299 FECRV--CNRRFMRSDHLAKHVKRHAKEK 219
F C C+ +F HL +H++ H K K
Sbjct: 83 FSCHYDGCDAQFYTQQHLERHIEVHRKPK 111
Score = 72.5 bits (170), Expect = 5e-14
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = -2
Query: 479 YECSYPGCGKNYFKSSHLKAHARTHTGERPFRCAWPGCERRFSRSDELSRHKRTHTGEKK 300
+ C Y GC K +++ SHLK H R HT +PF C + GC+ +F L RH H K
Sbjct: 53 FVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIEVHRKPKP 112
Query: 299 FEC--RVCNRRFMRSDHLAKHV 240
+ C C+ F + L H+
Sbjct: 113 YACTWEGCDECFSKHQQLRSHI 134
Score = 51.6 bits (118), Expect = 1e-07
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Frame = -2
Query: 458 CGKNYFKSSHLKAHARTHTG----ERPFRCAWPGCERRFSRSDELSRH-KRTHTGEKKFE 294
CG+ + ++HL+ H H + + C GC++ F+RS L +H H G F
Sbjct: 209 CGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNMAFH 268
Query: 293 CRVCNRRFMRSDHLAKHVKRHAKEKA 216
C C +F L +H++R +KA
Sbjct: 269 CDSCGTKFGYKHMLQRHLERGTCKKA 294
Score = 48.8 bits (111), Expect = 8e-07
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -2
Query: 404 TGERPFRCAWPGCERRFSRSDELSRHKRTHTGEKKFECRV--CNRRFMRSDHLAKHVKRH 231
+ ++ F C + C +++SR L +H RTH+ E+ F C C++ F R HL H + H
Sbjct: 18 SAKKIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCH 77
Query: 230 AKEK 219
K
Sbjct: 78 TNVK 81
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -2
Query: 479 YECSYPGCGKNYFKSSHLKAH-ARTHTGERPFRCAWPGCERRFSRSDELSRH-KRTHTGE 306
Y C++ GC + + K L++H + HT P+ C + CE RF+ +L H R H
Sbjct: 113 YACTWEGCDECFSKHQQLRSHISACHTHLLPYPCTYQDCELRFATKQKLQNHVNRAHEKI 172
Query: 305 KKFEC 291
+ C
Sbjct: 173 ISYSC 177
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -2
Query: 479 YECSYPGCGKNYFKSSHLKAHART-HTGERPFRCAWPGCERRFSRSDELSRHKRTHTGEK 303
Y C GC K++ +SS LK H H G F C C +F L RH T +K
Sbjct: 236 YHCPMEGCKKSFTRSSALKKHISVIHEGNMAFHC--DSCGTKFGYKHMLQRHLERGTCKK 293
Score = 29.5 bits (63), Expect = 0.49
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 395 RPFRCAWPGCERRFSRSDELSRHKRTH 315
R + C++P C RF R ++ RH +H
Sbjct: 347 REYSCSFPECNYRFKRLYDMHRHLNSH 373
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 85.4 bits (202), Expect = 7e-18
Identities = 35/81 (43%), Positives = 52/81 (64%)
Frame = -2
Query: 479 YECSYPGCGKNYFKSSHLKAHARTHTGERPFRCAWPGCERRFSRSDELSRHKRTHTGEKK 300
Y C++ GC K + ++ +LK+H THT RPF+C+ C++ F+R + RH++ HTG K
Sbjct: 570 YVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSI--CKKSFARQHDKRRHEQLHTGIKA 627
Query: 299 FECRVCNRRFMRSDHLAKHVK 237
F C CN+RF R D L +H K
Sbjct: 628 FACVTCNQRFARMDALNRHYK 648
Score = 54.0 bits (124), Expect = 2e-08
Identities = 25/80 (31%), Positives = 40/80 (50%)
Frame = -2
Query: 455 GKNYFKSSHLKAHARTHTGERPFRCAWPGCERRFSRSDELSRHKRTHTGEKKFECRVCNR 276
G SS KA + + + + + C + GC +RF+R+ L H THT + F+C +C +
Sbjct: 549 GNKSENSSSSKAKSESKS-QGNYVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKK 607
Query: 275 RFMRSDHLAKHVKRHAKEKA 216
F R +H + H KA
Sbjct: 608 SFARQHDKRRHEQLHTGIKA 627
Score = 43.6 bits (98), Expect = 3e-05
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = -2
Query: 479 YECSYPGCGKNYFKSSHLKAHARTHTGERPFRCAWPGCERRFSRSDELSRHKRTHTGE 306
++CS C K++ + + H + HTG + F C C +RF+R D L+RH ++ G+
Sbjct: 600 FQCSI--CKKSFARQHDKRRHEQLHTGIKAFACVT--CNQRFARMDALNRHYKSEVGQ 653
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 74.5 bits (175), Expect = 1e-14
Identities = 31/56 (55%), Positives = 39/56 (69%)
Frame = -2
Query: 479 YECSYPGCGKNYFKSSHLKAHARTHTGERPFRCAWPGCERRFSRSDELSRHKRTHT 312
Y+C P C K +++ H H RTHTGE+P C +PGC +RFSRSDEL+RH R HT
Sbjct: 26 YKC--PLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHT 79
Score = 55.2 bits (127), Expect = 9e-09
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = -2
Query: 395 RPFRCAWPGCERRFSRSDELSRHKRTHTGEKKFECRV--CNRRFMRSDHLAKHVKRH 231
RP++C P C + F R + +RH RTHTGEK C C +RF RSD L +H + H
Sbjct: 24 RPYKC--PLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIH 78
Score = 35.9 bits (79), Expect = 0.006
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 473 CSYPGCGKNYFKSSHLKAHARTHTGERPFRCA 378
C++PGC K + +S L HAR HT R A
Sbjct: 56 CTFPGCAKRFSRSDELTRHARIHTNANSRRNA 87
Score = 33.9 bits (74), Expect = 0.023
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -2
Query: 335 SRHKRTHTGEKKFECRVCNRRFMRSDHLAKHVKRHAKEK 219
SR + + ++C +C + F R +H +H++ H EK
Sbjct: 14 SRSTKNPDAPRPYKCPLCTKAFYRLEHQTRHIRTHTGEK 52
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 70.9 bits (166), Expect = 2e-13
Identities = 28/55 (50%), Positives = 38/55 (69%)
Frame = -2
Query: 479 YECSYPGCGKNYFKSSHLKAHARTHTGERPFRCAWPGCERRFSRSDELSRHKRTH 315
YEC P C + + + H H R+HTGE+PF C++P C++RF+R DEL RH RTH
Sbjct: 4 YEC--PFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTH 56
Score = 57.2 bits (132), Expect = 2e-09
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = -2
Query: 374 PGCERRFSRSDELSRHKRTHTGEKKFECRV--CNRRFMRSDHLAKHVKRHAKE 222
P C+R F R + RH R+HTGEK FEC C +RF R D L +HV+ H ++
Sbjct: 7 PFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTHLRK 59
Score = 35.1 bits (77), Expect = 0.010
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 305 KKFECRVCNRRFMRSDHLAKHVKRHAKEK 219
K +EC C R F R +H +H++ H EK
Sbjct: 2 KSYECPFCKRVFHRQEHQVRHIRSHTGEK 30
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 70.5 bits (165), Expect = 2e-13
Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = -2
Query: 443 FKSSHLKAHARTHT-GERPFRCAWPGCERRFSRSDELSRHKRTHTGEKKFECRVCNRRFM 267
F LK +R H G+ F C +P C + F+R + L RH+RTH K F C CNR F
Sbjct: 7 FTEKPLKKRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFA 66
Query: 266 RSDHLAKHVKRHAKEK 219
RSD L +HV++ +K
Sbjct: 67 RSDVLNRHVQQMHLQK 82
Score = 56.4 bits (130), Expect = 4e-09
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = -2
Query: 479 YECSYPGCGKNYFKSSHLKAHARTHTGERPFRCAWPGCERRFSRSDELSRH 327
+ C+YP C K++ + HL+ H RTH + F C++ C R F+RSD L+RH
Sbjct: 26 FYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSF--CNRAFARSDVLNRH 74
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 65.7 bits (153), Expect = 6e-12
Identities = 30/83 (36%), Positives = 46/83 (55%)
Frame = -2
Query: 479 YECSYPGCGKNYFKSSHLKAHARTHTGERPFRCAWPGCERRFSRSDELSRHKRTHTGEKK 300
Y C Y GC K + ++++H +TH +RP+RC C+ F R +L RH R H +
Sbjct: 443 YVCLYNGCNKRIARKYNVESHIQTHLSDRPYRCDL--CKAGFVRHHDLKRHLRIHENGRP 500
Query: 299 FECRVCNRRFMRSDHLAKHVKRH 231
+ C C +RF R D L +H +R+
Sbjct: 501 YVCE-CLKRFNRLDALNRHKQRN 522
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 58.0 bits (134), Expect = 1e-09
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Frame = -2
Query: 479 YECSYPGCG-KNYFKSSH--LKAHARTHTGERPFRCAWPGCERRFSRSDELSRHKRT 318
Y C + C K ++S L AH R+HTGE+PF C+ P C+R F+RSD L++H RT
Sbjct: 73 YTCEWDDCPRKGMVQTSRFALVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRT 129
Score = 50.0 bits (114), Expect = 3e-07
Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Frame = -2
Query: 407 HTGER--PFRCAWPGCERRFSRSDE---LSRHKRTHTGEKKFECRV--CNRRFMRSDHLA 249
H G R + C W C R+ L H R+HTGEK F C V C+R F RSD LA
Sbjct: 65 HIGNRRPKYTCEWDDCPRKGMVQTSRFALVAHLRSHTGEKPFICSVPECDRSFTRSDALA 124
Query: 248 KHVK 237
KH++
Sbjct: 125 KHMR 128
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 56.4 bits (130), Expect = 4e-09
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = -2
Query: 401 GERPFRCAWPGCERRFSRSDELSRHKRTHTGEKKFECRVCNRRFMRSDHLAKHV-KRHAK 225
G+ ++C + GC + F+R + RH R+HT K F C C+ F RSD L +HV ++H K
Sbjct: 13 GDIRYKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKHVK 72
Query: 224 E 222
+
Sbjct: 73 Q 73
Score = 54.0 bits (124), Expect = 2e-08
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = -2
Query: 479 YECSYPGCGKNYFKSSHLKAHARTHTGERPFRCAWPGCERRFSRSDELSRH 327
Y+C + GC K++ + H + H R+HT + F C P C F+RSD L+RH
Sbjct: 17 YKCDFQGCTKSFTRKEHARRHFRSHTNSKAFIC--PHCSSSFTRSDVLNRH 65
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 54.8 bits (126), Expect = 1e-08
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = -2
Query: 434 SHLKAHARTHTGERPFRCAWPGCERRFSRSDELSRHKRT-HTGEKKFECRVCNRRFMRSD 258
S+ K G + F C P C ++F RS+ L RH R+ HT EK F C +C +RF R D
Sbjct: 408 SNRKTSVPRSPGGKSFVC--PECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRD 464
Query: 257 HLAKHVKRH 231
+L +H + H
Sbjct: 465 NLRQHERLH 473
Score = 53.2 bits (122), Expect = 4e-08
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = -2
Query: 464 PGCGKNYFKSSHLKAHART-HTGERPFRCAWPGCERRFSRSDELSRHKRTH 315
P C K + +S HL+ H R+ HT E+PF C C +RFSR D L +H+R H
Sbjct: 426 PECSKKFKRSEHLRRHIRSLHTSEKPFVCI---CGKRFSRRDNLRQHERLH 473
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 52.0 bits (119), Expect = 8e-08
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = -2
Query: 479 YECSYPGCGKNYFKSSHLKAHARTHTGERPFRCAWPGCERRFSRSDELSRHKRTH 315
Y C+ C + + + S LK H +HTGERPF C + GC + F+ + RH+R H
Sbjct: 468 YRCTE--CLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRIH 520
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = -2
Query: 434 SHLKAHARTHTGERPFRCAWPGCERRFSRSDELSRHKRTHTGEKKFECRV--CNRRFMRS 261
SH + + + +RC C + FSR L H +HTGE+ F C C + F
Sbjct: 453 SHTGSSSTSSAANVRYRCT--ECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVR 510
Query: 260 DHLAKHVKRH 231
++ +H + H
Sbjct: 511 SNMRRHQRIH 520
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 48.0 bits (109), Expect = 1e-06
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Frame = -2
Query: 458 CGKNYFKSSHLKAHARTHTGERPFRCAW-----PGCERRFSRSDELSRHKR 321
C + + + HLK H R+HT E+PF C+ GC R+FSR D L RH++
Sbjct: 75 CTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQ 125
Score = 42.3 bits (95), Expect = 7e-05
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Frame = -2
Query: 368 CERRFSRSDELSRHKRTHTGEKKFECRV-------CNRRFMRSDHLAKHVKR 234
C R F+R + L RH R+HT EK F C C R+F R D L +H ++
Sbjct: 75 CTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQK 126
Score = 37.1 bits (82), Expect = 0.002
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 305 KKFECRVCNRRFMRSDHLAKHVKRHAKEK 219
K++ C C R F R +HL +H++ H EK
Sbjct: 68 KQYVCETCTRAFARLEHLKRHIRSHTNEK 96
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = -2
Query: 398 ERPFRCAWPGCERRFSRSDELSRHKRTHTGEKKFECRVCNRRFMRSDHLAKHVKRHAKEK 219
+R F C C +RF+R + L+RHK H+ + C C + R D L +H++R +K
Sbjct: 28 KRVFPC--DQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFHNDK 85
Query: 218 A 216
+
Sbjct: 86 S 86
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 33.9 bits (74), Expect = 0.023
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -2
Query: 458 CGKNYFKSSHLKAHART-HTGERP-FRCAWPGCERRFSRSDELSRHKRTHTG 309
C + ++ L H T H RP FRC G +R FSR D L RH R G
Sbjct: 585 CNTVFSRTYDLIRHQDTIHAKTRPVFRCEICGDQRHFSRHDALVRHLRVKHG 636
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 708 PTED*RSSRTVTPPGMSTETKHERRTARP-PGPVAGRH 598
PTE + + P +TETKH R+ + P P G+H
Sbjct: 685 PTEGQHARQESLPSQQTTETKHLRKESTPSKQPTEGQH 722
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 708 PTED*RSSRTVTPPGMSTETKHERRTARP-PGPVAGRH 598
PTE + + P +TETKH R+ + P P G+H
Sbjct: 717 PTEGQHTRQESLPSQQTTETKHLRKESIPSKQPTEGQH 754
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/79 (25%), Positives = 29/79 (36%)
Frame = -2
Query: 479 YECSYPGCGKNYFKSSHLKAHARTHTGERPFRCAWPGCERRFSRSDELSRHKRTHTGEKK 300
Y+C P C K Y + LK H + H P P H+ K
Sbjct: 350 YKCPVPNCDKAYKNQNGLKYH-KLHGHCSPITTPTPAP----------IPHQGFVVENKP 398
Query: 299 FECRVCNRRFMRSDHLAKH 243
+ C VC++R+ + L H
Sbjct: 399 YRCEVCSKRYKNLNGLKYH 417
Score = 27.1 bits (57), Expect = 2.6
Identities = 7/25 (28%), Positives = 15/25 (60%)
Frame = -2
Query: 398 ERPFRCAWPGCERRFSRSDELSRHK 324
++P++C P C++ + + L HK
Sbjct: 347 DKPYKCPVPNCDKAYKNQNGLKYHK 371
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = -2
Query: 380 AWPGCERRFSRSDELSRHKRTHTGEKKFECRVCNRRFMRSDHLAKH--VKRHAK 225
+W ++ + SD+ S K C VCN+ F + L H K+H K
Sbjct: 244 SWTIIDQEETSSDDESLSKEI-VNSNPIMCMVCNKNFRSQNQLENHENSKKHKK 296
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/39 (28%), Positives = 15/39 (38%)
Frame = -2
Query: 443 FKSSHLKAHARTHTGERPFRCAWPGCERRFSRSDELSRH 327
F+ LKA G +RC W GC + +H
Sbjct: 982 FEEKVLKAFNMLSKGYAEYRCQWEGCLANLHSLENFIKH 1020
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/50 (22%), Positives = 20/50 (40%)
Frame = -2
Query: 476 ECSYPGCGKNYFKSSHLKAHARTHTGERPFRCAWPGCERRFSRSDELSRH 327
+C + C S + H R H C C++ FS +++ +H
Sbjct: 1034 KCLWASCDM-VLPSEEFEMHLRGHLNNIRLNCEVSNCKKCFSNYEDMFKH 1082
>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 26.2 bits (55), Expect = 4.6
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 544 PGTRTAGAGLGASGTQPGVAAGDGAWGTRCSSLVFCFG*HSRWGDG 681
P +A A LGA +PG+ A G++G S +V +S +GDG
Sbjct: 88 PERPSADADLGAINLKPGIDASFGSFGELKSQMVDVG--NSVFGDG 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,854,919
Number of Sequences: 5004
Number of extensions: 28086
Number of successful extensions: 178
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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