Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d11r
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    85   8e-19
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    74   1e-15
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    59   4e-11
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    39   4e-05
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    31   0.011
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    25   0.93 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   5.0  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 84.6 bits (200), Expect = 8e-19
 Identities = 37/87 (42%), Positives = 52/87 (59%)
 Frame = -2

Query: 479 YECSYPGCGKNYFKSSHLKAHARTHTGERPFRCAWPGCERRFSRSDELSRHKRTHTGEKK 300
           Y+C Y  C K++    +L  H R HT ERP++C    CER F  S +L RH R HTGE+ 
Sbjct: 120 YQCEY--CSKSFSVKENLSVHRRIHTKERPYKC--DVCERAFEHSGKLHRHMRIHTGERP 175

Query: 299 FECRVCNRRFMRSDHLAKHVKRHAKEK 219
            +C VC++ F++S  L  H++ H  EK
Sbjct: 176 HKCTVCSKTFIQSGQLVIHMRTHTGEK 202



 Score = 72.9 bits (171), Expect = 3e-15
 Identities = 35/87 (40%), Positives = 46/87 (52%)
 Frame = -2

Query: 479 YECSYPGCGKNYFKSSHLKAHARTHTGERPFRCAWPGCERRFSRSDELSRHKRTHTGEKK 300
           Y+C    C + +  S  L  H R HTGERP +C    C + F +S +L  H RTHTGEK 
Sbjct: 148 YKCDV--CERAFEHSGKLHRHMRIHTGERPHKCTV--CSKTFIQSGQLVIHMRTHTGEKP 203

Query: 299 FECRVCNRRFMRSDHLAKHVKRHAKEK 219
           + C+ C + F  S  L  H + H  EK
Sbjct: 204 YVCKACGKGFTCSKQLKVHTRTHTGEK 230



 Score = 71.7 bits (168), Expect = 6e-15
 Identities = 33/80 (41%), Positives = 44/80 (55%)
 Frame = -2

Query: 458 CGKNYFKSSHLKAHARTHTGERPFRCAWPGCERRFSRSDELSRHKRTHTGEKKFECRVCN 279
           C K + +S  L  H RTHTGE+P+ C    C + F+ S +L  H RTHTGEK + C +C 
Sbjct: 181 CSKTFIQSGQLVIHMRTHTGEKPYVCK--ACGKGFTCSKQLKVHTRTHTGEKPYTCDICG 238

Query: 278 RRFMRSDHLAKHVKRHAKEK 219
           + F  +  L  H   H  EK
Sbjct: 239 KSFGYNHVLKLHQVAHYGEK 258



 Score = 67.7 bits (158), Expect = 1e-13
 Identities = 31/84 (36%), Positives = 44/84 (52%)
 Frame = -2

Query: 479 YECSYPGCGKNYFKSSHLKAHARTHTGERPFRCAWPGCERRFSRSDELSRHKRTHTGEKK 300
           Y C    CGK +  S  LK H RTHTGE+P+ C    C + F  +  L  H+  H GEK 
Sbjct: 204 YVCK--ACGKGFTCSKQLKVHTRTHTGEKPYTCDI--CGKSFGYNHVLKLHQVAHYGEKV 259

Query: 299 FECRVCNRRFMRSDHLAKHVKRHA 228
           ++C +C+  F     +  H+K H+
Sbjct: 260 YKCTLCHETFGSKKTMELHIKTHS 283



 Score = 65.7 bits (153), Expect = 4e-13
 Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
 Frame = -2

Query: 479 YECSYPGCGKNYFKSSHLKAHARTH--TGERPFRCAWPGCERRFSRSDELSRHKRTHTGE 306
           Y+C    C K + + +  ++H R+H   GE P+RC    C + F+    L+RH RTHTGE
Sbjct: 62  YQCLL--CQKAFDQKNLYQSHLRSHGKEGEDPYRCNI--CGKTFAVPARLTRHYRTHTGE 117

Query: 305 KKFECRVCNRRFMRSDHLAKHVKRHAKEK 219
           K ++C  C++ F   ++L+ H + H KE+
Sbjct: 118 KPYQCEYCSKSFSVKENLSVHRRIHTKER 146



 Score = 29.5 bits (63), Expect = 0.033
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 320 THTGEKKFECRVCNRRFMRSDHLAKHVKRHAKE 222
           T+  EK ++C +C + F + +    H++ H KE
Sbjct: 55  TNIEEKTYQCLLCQKAFDQKNLYQSHLRSHGKE 87



 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +1

Query: 274 RRLHTRHSNFFSPVCVRLCRDSSSERENLRSQPGHAHRNGRSPVC 408
           RR+HT+   +   VC R    S     ++R   G   R  +  VC
Sbjct: 139 RRIHTKERPYKCDVCERAFEHSGKLHRHMRIHTG--ERPHKCTVC 181


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 74.1 bits (174), Expect = 1e-15
 Identities = 30/65 (46%), Positives = 43/65 (66%)
 Frame = -2

Query: 413 RTHTGERPFRCAWPGCERRFSRSDELSRHKRTHTGEKKFECRVCNRRFMRSDHLAKHVKR 234
           RTHTGE+PF C  P C +RF+R   L  H R HTGEK + C  C+R+F++  +L +H++ 
Sbjct: 2   RTHTGEKPFEC--PECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRV 59

Query: 233 HAKEK 219
           H  E+
Sbjct: 60  HTGER 64



 Score = 70.5 bits (165), Expect = 1e-14
 Identities = 29/66 (43%), Positives = 41/66 (62%)
 Frame = -2

Query: 479 YECSYPGCGKNYFKSSHLKAHARTHTGERPFRCAWPGCERRFSRSDELSRHKRTHTGEKK 300
           +EC  P C K + +  HLK H R HTGE+P+ C+   C+R+F +   L RH R HTGE+ 
Sbjct: 10  FEC--PECHKRFTRDHHLKTHMRLHTGEKPYHCS--HCDRQFVQVANLRRHLRVHTGERP 65

Query: 299 FECRVC 282
           + C +C
Sbjct: 66  YACELC 71



 Score = 50.8 bits (116), Expect = 1e-08
 Identities = 20/36 (55%), Positives = 25/36 (69%)
 Frame = -2

Query: 326 KRTHTGEKKFECRVCNRRFMRSDHLAKHVKRHAKEK 219
           +RTHTGEK FEC  C++RF R  HL  H++ H  EK
Sbjct: 1   ERTHTGEKPFECPECHKRFTRDHHLKTHMRLHTGEK 36


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 59.3 bits (137), Expect = 4e-11
 Identities = 33/70 (47%), Positives = 37/70 (52%)
 Frame = -2

Query: 479 YECSYPGCGKNYFKSSHLKAHARTHTGERPFRCAWPGCERRFSRSDELSRHKRTHTGEKK 300
           + C Y  C K Y     LK H RTHT   P +C    C + FSR   L  H RTHTGEK 
Sbjct: 17  FSCKY--CEKVYVSLGALKMHIRTHT--LPCKCHL--CGKAFSRPWLLQGHIRTHTGEKP 70

Query: 299 FECRVCNRRF 270
           F C+ CNR F
Sbjct: 71  FSCQHCNRAF 80



 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = -2

Query: 431 HLKAHARTHTGE--RPFRCAWPGCERRFSRSDELSRHKRTHTGEKKFECRVCNRRFMRSD 258
           H + H     G+  + F C +  CE+ +     L  H RTHT   K  C +C + F R  
Sbjct: 1   HQQFHCAAAEGQAKKSFSCKY--CEKVYVSLGALKMHIRTHTLPCK--CHLCGKAFSRPW 56

Query: 257 HLAKHVKRHAKEK 219
            L  H++ H  EK
Sbjct: 57  LLQGHIRTHTGEK 69


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 39.1 bits (87), Expect = 4e-05
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = -2

Query: 431 HLKAHARTHTGERPFRCAWPGCERRFSRSDELSRHKRTHTGEKKFECRVCNRRFMRSDHL 252
           HL+ H R H G +PF+C    C         L+ H ++H+   ++ C  C         L
Sbjct: 3   HLEYHLRNHFGSKPFKC--EKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSL 60

Query: 251 AKHVKRHA 228
             H+++++
Sbjct: 61  KLHLRKYS 68


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 31.1 bits (67), Expect = 0.011
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = -2

Query: 374 PGCERRFSRSDELSRH--KRTHTGEKKFECRVCNRRFMRSDHLAKH 243
           P C R FS    L RH   +    +  + C  CNRR+   + L  H
Sbjct: 9   PYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTH 54


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = -2

Query: 458 CGKNYFKSSHLKAHARTHTGERP--FRCAWPGCERRFSRSDELSRHKRTH 315
           CGK     + LK H      ER   +RC    CER +   + L  H  T+
Sbjct: 11  CGKVLCSKASLKRHVADKHAERQEEYRCVI--CERVYCSRNSLMTHIYTY 58



 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
 Frame = -2

Query: 368 CERRFSRSDELSRHKRTHTGEKK--FECRVCNRRFMRSDHLAKHVKRHAKEK 219
           C +       L RH      E++  + C +C R +   + L  H+  + K +
Sbjct: 11  CGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTYHKSR 62



 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 314 TGEKKFECRVCNRRFMRSDHLAKHV-KRHAKEK 219
           + +K F C++C +       L +HV  +HA+ +
Sbjct: 1   SAKKLFTCQLCGKVLCSKASLKRHVADKHAERQ 33


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -2

Query: 383 CAWPGCE 363
           C WPGCE
Sbjct: 283 CKWPGCE 289


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 683 VPSPHLECQPKQNTRDEQRVPQAPSPAAT 597
           VP  H +  PKQ  R +   P+A S   T
Sbjct: 276 VPGDHGDHAPKQTVRFKVHDPKAHSKGGT 304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,413
Number of Sequences: 438
Number of extensions: 2710
Number of successful extensions: 37
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)