Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d11f
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    28   1.4  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    28   1.4  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    26   4.2  
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo...    26   4.2  
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    25   9.8  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    25   9.8  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    25   9.8  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 448 PTED*RSSRTVTPPGMSTETKHERRTARP-PGPVAGRH 558
           PTE   + +   P   +TETKH R+ + P   P  G+H
Sbjct: 685 PTEGQHARQESLPSQQTTETKHLRKESTPSKQPTEGQH 722



 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 448 PTED*RSSRTVTPPGMSTETKHERRTARP-PGPVAGRH 558
           PTE   + +   P   +TETKH R+ + P   P  G+H
Sbjct: 717 PTEGQHTRQESLPSQQTTETKHLRKESIPSKQPTEGQH 754


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 381 HKPNTLRAKRLLPFRSPFNLPVPHRRLKKLAYRHPTWNVNRNKTR 515
           H  N   +K  +PFR P + P+P + L     R  + +++RN+TR
Sbjct: 295 HSDNNSPSKPEIPFRHPTSKPLPPKPLS----RSKSSSLSRNQTR 335


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +2

Query: 35  LSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGEDEFSKRS 196
           L  P T    E K   P      +R  E+S+ P  + TPQ  ++       KR+
Sbjct: 306 LLTPQTLSTSETKHIRPNNSTPYQRRAETSTKPKAVATPQKVEAPSAPRLQKRA 359


>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -1

Query: 612 PGTRTAGAGLGASGTQPGVAAGDGAWGTRCSSLVFCFG*HSRWGDG 475
           P   +A A LGA   +PG+ A  G++G   S +V     +S +GDG
Sbjct: 88  PERPSADADLGAINLKPGIDASFGSFGELKSQMVDVG--NSVFGDG 131


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 500 VDIPGGVTVRELLQSSVGD 444
           +DIPGGV+ RE    S GD
Sbjct: 160 IDIPGGVSFRESDSLSPGD 178


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 223 HDAAPGAVLQALGHHAGPQGRHLQSGASAAPARARHEH 336
           HD     + + LG H G  G H  SG+ +  +   + H
Sbjct: 208 HDIPSQFIFRKLGLHHGKHGHHGHSGSLSLKSLVPNHH 245


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 80  LPLKKIAAKRARESSSPPAGLVTPQPSDSEGEDEFSK 190
           +P KK AAK+ARE+      + +  P+D +  D+  +
Sbjct: 1   MPRKKSAAKKAREALVQKKVINSNVPTDKKSIDQLQE 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,097
Number of Sequences: 5004
Number of extensions: 37891
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)