Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d11f
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0610 - 25449085-25453284 31 0.82
02_01_0020 - 127572-127637,127760-127819,127903-128004,128099-12... 29 2.5
04_01_0541 - 6998030-6998521,7000666-7000732,7001057-7001202 29 3.3
02_01_0279 - 1860410-1860508,1861536-1861889,1862660-1862805,186... 29 4.4
02_03_0120 + 15463163-15465250 25 5.0
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 28 5.8
09_02_0303 + 7112456-7113244,7113328-7113488,7114523-7114583,711... 28 5.8
07_01_0678 - 5103836-5104613,5104697-5104888,5104994-5105036,510... 28 5.8
04_04_0964 - 29749624-29749649,29749742-29749945,29750036-297506... 28 5.8
01_05_0534 + 22999876-23000333,23000835-23000949 28 5.8
01_05_0463 + 22461169-22461216,22463153-22463248,22463334-224634... 28 5.8
04_04_0360 - 24684159-24684565,24684654-24685089 23 7.0
11_06_0202 - 21184217-21184503,21184622-21184982 24 7.2
07_01_0579 + 4299104-4299652,4300845-4300935,4301018-4301211,430... 28 7.7
06_03_0313 - 19475203-19475244,19475883-19475976,19476933-194771... 28 7.7
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 28 7.7
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 31.1 bits (67), Expect = 0.82
Identities = 26/97 (26%), Positives = 32/97 (32%), Gaps = 1/97 (1%)
Frame = +2
Query: 32 PLSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQ-PSDSEGEDEFSKRSXXXX 208
P SP +PP + P + + E SSPP +P PS EG +S
Sbjct: 783 PHSPEKSPPSEAHPTSPPPSEKSPPTPAEESSPPTPEKSPSPPSGHEGTPPSPVKSSSPP 842
Query: 209 XXXXXXXXXXXXXYRPSVIMRAHKDGTCSPEPLPPPP 319
P AH PE PPPP
Sbjct: 843 PEAHVSSPPPEKSSSPP--PEAHVSSPPPPEKSPPPP 877
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +2
Query: 32 PLSPP----STPPLMENKVELPLKKIAAKRARESSSPPA 136
PL PP S PP + + P K+ A A+ES PPA
Sbjct: 1327 PLPPPVPQVSLPPPKQESLPPPAKEAEAPPAKESKPPPA 1365
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +2
Query: 32 PLSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGED 178
P PP PPL+ V P K A + + S P P P + E+
Sbjct: 422 PSEPPEKPPLIPVPVGPPEKSPAYEEPPAAPSTPTSHGPPPPEEESPEE 470
>02_01_0020 -
127572-127637,127760-127819,127903-128004,128099-128194,
128649-128756,128849-128899,129018-130118
Length = 527
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 86 LKKIAAKRARESSSPPAGLVTPQPSDSEGEDE 181
++K+ +RA+E ++P P SDS+ EDE
Sbjct: 103 IEKLERRRAKEEAAPDDSFWEPTDSDSDEEDE 134
>04_01_0541 - 6998030-6998521,7000666-7000732,7001057-7001202
Length = 234
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -1
Query: 180 SSSPSESEGWGVTRPAGGDDDSLARFAAIFLRGSSTLFSINGGVDG--GERG 31
S S G GV+ +GGD D R +AI RG + S++GG +G GE G
Sbjct: 156 SGGVSAGGGDGVSN-SGGDGDGNGRVSAIGQRGLDSDGSLDGGGNGDIGEGG 206
>02_01_0279 -
1860410-1860508,1861536-1861889,1862660-1862805,
1862885-1862925,1863010-1863173,1863217-1863281,
1863410-1863670,1863754-1863817,1863946-1864006,
1864112-1864473
Length = 538
Score = 28.7 bits (61), Expect = 4.4
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 281 DGTCSPEPLPPPP 319
+G+C P+P PPPP
Sbjct: 78 EGSCDPDPTPPPP 90
>02_03_0120 + 15463163-15465250
Length = 695
Score = 24.6 bits (51), Expect(2) = 5.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 296 PEPLPPPPAHGMNMLKTLKFKMNRG 370
P P PPPP H + + L +K+ G
Sbjct: 311 PPPSPPPPPHPNHRRRHLFYKVLGG 335
Score = 22.2 bits (45), Expect(2) = 5.0
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 293 SPEPLPPPPA 322
SP P PPPP+
Sbjct: 305 SPSPSPPPPS 314
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/44 (40%), Positives = 19/44 (43%)
Frame = +2
Query: 32 PLSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPSD 163
P +PP PP M LP I A SS PP L P P D
Sbjct: 374 PPNPPPPPPPMSPSCLLP-PIIPAPTFTYSSPPPPPLYYPPPPD 416
>09_02_0303 +
7112456-7113244,7113328-7113488,7114523-7114583,
7114665-7114733,7114862-7114947,7115399-7115456,
7115631-7115843,7116059-7116124,7116368-7116484,
7116595-7116657
Length = 560
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 357 LNLSVLSMFMPCAGGGGRGSG-LQVPSLWAR 268
L+ ++ + P A GGRG G VP+LWAR
Sbjct: 136 LHTALTRLAGPAARRGGRGGGGYPVPTLWAR 166
>07_01_0678 -
5103836-5104613,5104697-5104888,5104994-5105036,
5105712-5105835,5105924-5106016,5106754-5106931,
5107032-5107138,5108098-5108179,5108277-5108314,
5108409-5108495,5109025-5109135,5109282-5109773
Length = 774
Score = 28.3 bits (60), Expect = 5.8
Identities = 24/92 (26%), Positives = 35/92 (38%)
Frame = +2
Query: 44 PSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGEDEFSKRSXXXXXXXXX 223
PS PP + + P+ A A S PP Q + +EGE+E K+
Sbjct: 20 PSPPPHADPRSAPPMPSSADADAPSSPPPPQ-----QEAAAEGEEEEEKKQQREEEEEAP 74
Query: 224 XXXXXXXXYRPSVIMRAHKDGTCSPEPLPPPP 319
P+ +A C+ +P PPPP
Sbjct: 75 APAPAPAP-EPAP-RKARLPRACNSKPKPPPP 104
>04_04_0964 -
29749624-29749649,29749742-29749945,29750036-29750634,
29750742-29750826,29750914-29751562,29751568-29751643,
29753891-29753957,29754097-29754998,29756579-29756790
Length = 939
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 346 CLEHVHAVRGRGRQRLRTAGAVLVG 272
CLE + VRGRG +RLR L G
Sbjct: 134 CLEGLERVRGRGHERLRVVAYRLGG 158
>01_05_0534 + 22999876-23000333,23000835-23000949
Length = 190
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +2
Query: 32 PLSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPSDS 166
PLSPP P + L K A SSSPP P+P +
Sbjct: 53 PLSPPPKTPTLSTPPTLSQPPTPVKPAAPSSSPPPS-QDPEPKQA 96
>01_05_0463 +
22461169-22461216,22463153-22463248,22463334-22463446,
22463479-22463494,22463939-22464031,22464118-22464261,
22464508-22464596,22464687-22464792,22464874-22464961,
22465585-22465703,22465788-22465952,22466235-22466404,
22466488-22466597,22466682-22466791,22466886-22466996,
22467082-22467183,22467266-22467471,22467563-22467881,
22467983-22468093
Length = 771
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 381 HKPNTLRAKRLLPFRSPFNLPVPHRRLKKLAY 476
HKP T+ + + + F +PVPHR ++ LAY
Sbjct: 188 HKP-TMWTEAWTAWYTGFGIPVPHRPVEDLAY 218
>04_04_0360 - 24684159-24684565,24684654-24685089
Length = 280
Score = 23.4 bits (48), Expect(2) = 7.0
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -1
Query: 327 PCAGGGGRGSG 295
PC GGGG G G
Sbjct: 53 PCYGGGGGGGG 63
Score = 23.0 bits (47), Expect(2) = 7.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 318 GGGGRGSGLQVPSL 277
GGGG GSG+ V S+
Sbjct: 69 GGGGGGSGVSVESV 82
>11_06_0202 - 21184217-21184503,21184622-21184982
Length = 215
Score = 24.2 bits (50), Expect(2) = 7.2
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 293 SPEPLPPPP 319
SP PLPPPP
Sbjct: 175 SPSPLPPPP 183
Score = 22.2 bits (45), Expect(2) = 7.2
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +2
Query: 296 PEPLPPPPAHG 328
P P PPP +HG
Sbjct: 180 PPPPPPPTSHG 190
>07_01_0579 +
4299104-4299652,4300845-4300935,4301018-4301211,
4301501-4301622,4302378-4302856,4303033-4303334
Length = 578
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 11 TLLEVCGPLSPPSTPPLMENKVELPLKKIAAKRARESS 124
TLL + P P + PPL + LP +++A A SS
Sbjct: 10 TLLHLAAPRKPSAGPPLPPATLRLPSRRLARLTASCSS 47
>06_03_0313 -
19475203-19475244,19475883-19475976,19476933-19477129,
19477254-19477394,19477873-19478073,19478775-19478894,
19479677-19479859,19479946-19480095,19481305-19481508,
19481545-19481547
Length = 444
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 603 RTAGAGLGASGTQPGVAAGDGAWGTRCSS 517
R AGA + + PG A GAWG + ++
Sbjct: 23 RRAGADVSVASVDPGSAQVGGAWGVKLAA 51
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 83 PLKKIAAKRARESSSPPAGLVTPQPSDSEG 172
PL+ AA A +++PPA + P ++EG
Sbjct: 38 PLRSRAAAAAASAAAPPAETIPDMPEETEG 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,696,302
Number of Sequences: 37544
Number of extensions: 392520
Number of successful extensions: 3347
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3331
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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