Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d11f
(666 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31572| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 30 1.9
SB_48119| Best HMM Match : TLD (HMM E-Value=2e-14) 29 2.6
SB_11868| Best HMM Match : zf-CHC2 (HMM E-Value=0.64) 27 3.1
SB_20622| Best HMM Match : zf-CHC2 (HMM E-Value=0.64) 27 3.3
SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026) 29 4.5
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_54349| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82) 28 7.9
SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37) 28 7.9
SB_23039| Best HMM Match : rve (HMM E-Value=2.8e-20) 28 7.9
SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_18880| Best HMM Match : zf-CCHC (HMM E-Value=0.00013) 28 7.9
SB_17215| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_26475| Best HMM Match : Cadherin (HMM E-Value=0.009) 25 9.1
>SB_31572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 31.1 bits (67), Expect = 0.84
Identities = 23/66 (34%), Positives = 27/66 (40%)
Frame = +3
Query: 279 RTAPAVRSLCRPRPRTA*TCSRHLNLK*TEDTVIHKPNTLRAKRLLPFRSPFNLPVPHRR 458
R P C P CS L + + H +TLRA+R LP SPF H
Sbjct: 13 RALPERHEACAPYRSEKSVCSP-LGISKVSRLLYHAEDTLRARRPLPGDSPFTQKGNH-- 69
Query: 459 LKKLAY 476
KK AY
Sbjct: 70 YKKTAY 75
>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 62 MENKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGE 175
ME + P K++ + A ES +PP TP+PS E E
Sbjct: 171 METEPTPPPKEMPPQPAEESRTPPGSRSTPEPSLEEPE 208
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 23 VCGPLSPPSTPPLMENKV--ELPLKKIAAKRARESSSPP 133
VC P SPP TPP + PLKKI+ + +S P
Sbjct: 1651 VCLPESPPPTPPRHSQTAPQQSPLKKISTNQQCTDTSQP 1689
>SB_48119| Best HMM Match : TLD (HMM E-Value=2e-14)
Length = 870
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 110 ARESSSPPAGLVTPQPSDSEGEDEFSKRS 196
AR+ SPP TP+P + + ED+ RS
Sbjct: 4 ARQQISPPPNRGTPKPKELQDEDDLDARS 32
>SB_11868| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)
Length = 500
Score = 27.1 bits (57), Expect(2) = 3.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 296 PEPLPPPPAHGMNML 340
P PLPPPP G N+L
Sbjct: 299 PPPLPPPPPSGGNIL 313
Score = 20.6 bits (41), Expect(2) = 3.1
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 287 TCSPEPLPPPP 319
T P P PPPP
Sbjct: 290 TLPPPPPPPPP 300
>SB_20622| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)
Length = 276
Score = 27.1 bits (57), Expect(2) = 3.3
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 296 PEPLPPPPAHGMNML 340
P PLPPPP G N+L
Sbjct: 75 PPPLPPPPPSGGNIL 89
Score = 20.6 bits (41), Expect(2) = 3.3
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 287 TCSPEPLPPPP 319
T P P PPPP
Sbjct: 66 TLPPPPPPPPP 76
>SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026)
Length = 1080
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 184 QQAIPMRAGALASHDAAPGAVLQALGHHAGPQGRHLQSGASAAPARARHEHAQDT 348
Q+A P R H+A+P V ++ AGP + A+P R Q+T
Sbjct: 323 QEAGPSRVRDSTEHEASPRCVRDSMEQEAGPSRVRDSTEHEASPRCVRDSMEQET 377
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 609 GTRTAGAGLGASGTQPGVAAGDGAWGTRCSSLVFCF 502
G AG G+GA G G G G + + SS F +
Sbjct: 1823 GMGAAGGGMGAGGEGGGAGGGGGGYSAQKSSSSFSY 1858
>SB_54349| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 971
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 331 HAVRGRGRQRLRTAGAV 281
HAVRGRGR R R +G +
Sbjct: 244 HAVRGRGRGRARRSGGI 260
>SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82)
Length = 896
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +2
Query: 32 PLSPPSTPPLME---NKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGE 175
PL P PLM K P++K AK A + PP ++P S S+GE
Sbjct: 846 PLQTPRKRPLMTLLAKKKRQPMRK--AKAAWDPRPPPPCPISPTISPSDGE 894
>SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37)
Length = 700
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 331 HAVRGRGRQRLRTAGAV 281
HAVRGRGR R R +G +
Sbjct: 519 HAVRGRGRGRARRSGGI 535
>SB_23039| Best HMM Match : rve (HMM E-Value=2.8e-20)
Length = 984
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 331 HAVRGRGRQRLRTAGAV 281
HAVRGRGR R R +G +
Sbjct: 588 HAVRGRGRGRARRSGGI 604
>SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 293 SPEPLPPPPAHGMN 334
SP P PPPPAH +N
Sbjct: 582 SPPPHPPPPAHHVN 595
>SB_18880| Best HMM Match : zf-CCHC (HMM E-Value=0.00013)
Length = 388
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 331 HAVRGRGRQRLRTAGAV 281
HAVRGRGR R R +G +
Sbjct: 242 HAVRGRGRGRARRSGGI 258
>SB_17215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 59 LMENKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGEDE 181
L + K+ + IA R +SP + L+TP PS S G D+
Sbjct: 221 LFDPKLAYSKEVIAIAHQRRITSPGSPLLTPTPSASYGIDQ 261
>SB_26475| Best HMM Match : Cadherin (HMM E-Value=0.009)
Length = 340
Score = 24.6 bits (51), Expect(2) = 9.1
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 296 PEPLPPPPAH-GMNMLKTLKFKMNRGHSYSQT 388
P PLPPPP + + TL K N+G+ + T
Sbjct: 168 PPPLPPPPPPIDLVDMSTLS-KFNKGYKFLLT 198
Score = 21.4 bits (43), Expect(2) = 9.1
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 293 SPEPLPPPP 319
SP P PPPP
Sbjct: 161 SPPPQPPPP 169
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,284,051
Number of Sequences: 59808
Number of extensions: 336078
Number of successful extensions: 1620
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1615
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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