Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d11f
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical pr...    33   0.24 
Z68751-9|CAA92979.2|  238|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z68337-11|CAA92754.2|  238|Caenorhabditis elegans Hypothetical p...    30   1.7  
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U29382-6|AAF99998.1|  379|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    29   3.0  
Z48783-4|CAA88698.1|  359|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF098992-8|AAC67454.2|  239|Caenorhabditis elegans Hypothetical ...    27   9.1  
AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical ...    27   9.1  

>U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical
           protein B0507.3 protein.
          Length = 432

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 32  PLSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQP 157
           P +P   PP++  +VELP K  +  + + + SPP   VTP P
Sbjct: 335 PSTPIPAPPVLVPQVELPAKTSSVSQ-KTTVSPPVEKVTPPP 375


>Z68751-9|CAA92979.2|  238|Caenorhabditis elegans Hypothetical
           protein T05E11.7 protein.
          Length = 238

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +2

Query: 17  LEVCGPLSPPST--PPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGEDEFSK 190
           L VCG    P+T  P  + + +E P   +   +    S  PAG    + +  + ED+ ++
Sbjct: 3   LFVCGKSKKPTTASPAALPSSIESPGPPVPQTQKSSKSQQPAGSAEEKKNPEKAEDKQNR 62

Query: 191 RS 196
           +S
Sbjct: 63  KS 64


>Z68337-11|CAA92754.2|  238|Caenorhabditis elegans Hypothetical
           protein T05E11.7 protein.
          Length = 238

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +2

Query: 17  LEVCGPLSPPST--PPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGEDEFSK 190
           L VCG    P+T  P  + + +E P   +   +    S  PAG    + +  + ED+ ++
Sbjct: 3   LFVCGKSKKPTTASPAALPSSIESPGPPVPQTQKSSKSQQPAGSAEEKKNPEKAEDKQNR 62

Query: 191 RS 196
           +S
Sbjct: 63  KS 64


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 363 FILNLSVLSMFMPCAGGGGRGSG 295
           F+L + V S   P AGGGG G G
Sbjct: 11  FLLTIHVSSFLFPSAGGGGGGGG 33


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 363 FILNLSVLSMFMPCAGGGGRGSG 295
           F+L + V S   P AGGGG G G
Sbjct: 11  FLLTIHVSSFLFPSAGGGGGGGG 33


>U29382-6|AAF99998.1|  379|Caenorhabditis elegans Hypothetical
           protein R03H10.1 protein.
          Length = 379

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +2

Query: 2   RMSTLLEVCGPLSPPSTPPLMENKVELPLKKIAAKRARESS 124
           +++  L++   L+P S+ PL+   +   LKK+  KR +E+S
Sbjct: 260 KLAVDLQIVEVLTPLSSSPLLNGPIHEILKKLEGKREKENS 300


>Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical
           protein F42G4.3a protein.
          Length = 603

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 29  GPLSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPS 160
           GP  PP  PPL+ +   LP +K   + A   ++ PA    P+PS
Sbjct: 2   GPPPPPPPPPLLPSGEILPSRKWKTEDAPRRNNHPAP-APPKPS 44


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
            F15D4.7 protein.
          Length = 2268

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 254  PSVIMRAHKDGTCSPEPLPPPPAHGMNMLKTLKFKMNR 367
            PS+      D   SP PLPP PAH   +   L  K+++
Sbjct: 2102 PSIEEEDDPDDKSSPLPLPPSPAHIQQLPSNLAPKLSQ 2139


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
            protein F15D4.7 protein.
          Length = 2268

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 254  PSVIMRAHKDGTCSPEPLPPPPAHGMNMLKTLKFKMNR 367
            PS+      D   SP PLPP PAH   +   L  K+++
Sbjct: 2102 PSIEEEDDPDDKSSPLPLPPSPAHIQQLPSNLAPKLSQ 2139


>Z48783-4|CAA88698.1|  359|Caenorhabditis elegans Hypothetical
           protein F33H1.3 protein.
          Length = 359

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 53  PPLMENKVELPLKKIAAKRA-RESSSPPAGLVTPQPSDSEGEDE 181
           P +++ KVE  L     + A ++   PP GL  P  SDSE E+E
Sbjct: 159 PAMIKRKVEFQLPPRPVRVAGQKPPGPPCGLA-PNFSDSEEEEE 201


>AF098992-8|AAC67454.2|  239|Caenorhabditis elegans Hypothetical
           protein F53C3.3 protein.
          Length = 239

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 363 FILNLSVLSMFMPCAGGGGRGSG 295
           F+L  S+LS  +   GGGGRG G
Sbjct: 8   FLLICSLLSRSIDARGGGGRGGG 30


>AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.3 protein.
          Length = 679

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 65  ENKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGEDE 181
           E +V+   KK      + S  P A + + +PSD+E E+E
Sbjct: 436 EEEVDYSPKKKVKSPKKSSKKPAAKVESEEPSDNEEEEE 474


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,457,754
Number of Sequences: 27780
Number of extensions: 256193
Number of successful extensions: 1436
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)