Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d11f
(666 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34430.4 68417.m04893 DNA-binding family protein contains Pfa... 36 0.018
At4g34430.3 68417.m04892 DNA-binding family protein contains Pfa... 36 0.018
At4g34430.2 68417.m04891 DNA-binding family protein contains Pfa... 36 0.018
At4g34430.1 68417.m04890 DNA-binding family protein contains Pfa... 36 0.018
At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit (... 29 2.1
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 29 2.8
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 29 2.8
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 29 2.8
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 29 2.8
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 29 2.8
At5g07780.1 68418.m00890 formin homology 2 domain-containing pro... 28 4.9
At4g01985.1 68417.m00265 expressed protein 28 4.9
At3g08630.1 68416.m01002 expressed protein 28 4.9
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 28 4.9
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 28 6.4
At1g72790.1 68414.m08415 hydroxyproline-rich glycoprotein family... 28 6.4
At1g02405.1 68414.m00187 proline-rich family protein contains pr... 28 6.4
At3g13110.1 68416.m01641 serine O-acetyltransferase (SAT-1) iden... 27 8.5
At1g53800.1 68414.m06123 expressed protein 27 8.5
At1g01030.1 68414.m00003 DNA-binding protein, putative similar t... 27 8.5
>At4g34430.4 68417.m04893 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 986
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 53 PPLMENKVELPLKKIAAKRARESSSPPAGLVTPQP 157
PP M +K LP +IAA A + PP G+ P+P
Sbjct: 916 PPSMSSKASLPTNRIAANFANVAQRPPMGMAFPRP 950
>At4g34430.3 68417.m04892 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 983
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 53 PPLMENKVELPLKKIAAKRARESSSPPAGLVTPQP 157
PP M +K LP +IAA A + PP G+ P+P
Sbjct: 913 PPSMSSKASLPTNRIAANFANVAQRPPMGMAFPRP 947
>At4g34430.2 68417.m04891 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 53 PPLMENKVELPLKKIAAKRARESSSPPAGLVTPQP 157
PP M +K LP +IAA A + PP G+ P+P
Sbjct: 915 PPSMSSKASLPTNRIAANFANVAQRPPMGMAFPRP 949
>At4g34430.1 68417.m04890 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 53 PPLMENKVELPLKKIAAKRARESSSPPAGLVTPQP 157
PP M +K LP +IAA A + PP G+ P+P
Sbjct: 915 PPSMSSKASLPTNRIAANFANVAQRPPMGMAFPRP 949
>At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit
(IRX3) identical to gi:5230423
Length = 1026
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 132 GGDDDSLARFAAIFLRGSSTLFSINGGVDGGERG 31
G +DD RF + G S F + GG GE G
Sbjct: 137 GPEDDENGRFPPVIAGGHSGEFPVGGGYGNGEHG 170
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +1
Query: 178 RVQQAIPMRAGALASHDAAPGAVLQALGHHAGP--QGRHLQSGASAAPARARHEHAQDT* 351
R++Q PM + H A A+L++ +H G QG H Q G SAA + + Q T
Sbjct: 143 RMKQPNPMNSETSQPHLDARMALLKSATNHHGQIVQGNH-QGGVSAALQQIQSRTQQPTE 201
Query: 352 I*NEPRTQLFTNQIHCEPN 408
I E Q+ +P+
Sbjct: 202 IKTEVNLGTSPRQLPVDPS 220
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +1
Query: 178 RVQQAIPMRAGALASHDAAPGAVLQALGHHAGP--QGRHLQSGASAAPARARHEHAQDT* 351
R++Q PM + H A A+L++ +H G QG H Q G SAA + + Q T
Sbjct: 143 RMKQPNPMNSETSQPHLDARMALLKSATNHHGQIVQGNH-QGGVSAALQQIQSRTQQPTE 201
Query: 352 I*NEPRTQLFTNQIHCEPN 408
I E Q+ +P+
Sbjct: 202 IKTEVNLGTSPRQLPVDPS 220
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +1
Query: 178 RVQQAIPMRAGALASHDAAPGAVLQALGHHAGP--QGRHLQSGASAAPARARHEHAQDT* 351
R++Q PM + H A A+L++ +H G QG H Q G SAA + + Q T
Sbjct: 143 RMKQPNPMNSETSQPHLDARMALLKSATNHHGQIVQGNH-QGGVSAALQQIQSRTQQPTE 201
Query: 352 I*NEPRTQLFTNQIHCEPN 408
I E Q+ +P+
Sbjct: 202 IKTEVNLGTSPRQLPVDPS 220
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +1
Query: 178 RVQQAIPMRAGALASHDAAPGAVLQALGHHAGP--QGRHLQSGASAAPARARHEHAQDT* 351
R++Q PM + H A A+L++ +H G QG H Q G SAA + + Q T
Sbjct: 143 RMKQPNPMNSETSQPHLDARMALLKSATNHHGQIVQGNH-QGGVSAALQQIQSRTQQPTE 201
Query: 352 I*NEPRTQLFTNQIHCEPN 408
I E Q+ +P+
Sbjct: 202 IKTEVNLGTSPRQLPVDPS 220
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +1
Query: 178 RVQQAIPMRAGALASHDAAPGAVLQALGHHAGP--QGRHLQSGASAAPARARHEHAQDT* 351
R++Q PM + H A A+L++ +H G QG H Q G SAA + + Q T
Sbjct: 143 RMKQPNPMNSETSQPHLDARMALLKSATNHHGQIVQGNH-QGGVSAALQQIQSRTQQPTE 201
Query: 352 I*NEPRTQLFTNQIHCEPN 408
I E Q+ +P+
Sbjct: 202 IKTEVNLGTSPRQLPVDPS 220
>At5g07780.1 68418.m00890 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 464
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +2
Query: 32 PLSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTP 151
PL PP PPLM + P +R PP L P
Sbjct: 28 PLPPPPPPPLMRRRAPPPPPPPLMRRRAPPPPPPPPLPRP 67
>At4g01985.1 68417.m00265 expressed protein
Length = 579
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 609 GTRTAGAGLGASGTQPGVAAGDGAWGTR 526
G G G+GA G+ G AAG G G R
Sbjct: 550 GGANVGVGVGAGGSTGGGAAGGGGVGNR 577
>At3g08630.1 68416.m01002 expressed protein
Length = 339
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 354 NLSVLSMFMPCAGGGGRGS 298
N S ++ +PCAGGGG GS
Sbjct: 49 NFSSPNIMVPCAGGGGGGS 67
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 417 PFRSPFNLPVPHRRLKKLAYRHP 485
PFR+P P+PH LKKL + P
Sbjct: 174 PFRAPLR-PIPHEDLKKLGIQLP 195
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +2
Query: 32 PLSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGEDE 181
P+ PPS PP M +P +A G V SDSE +DE
Sbjct: 37 PVVPPSFPPPMAPIPMMPHPPVARPPTFRPPVSQNGGVKTSDSDSESDDE 86
>At1g72790.1 68414.m08415 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 561
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +2
Query: 20 EVCGPLSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGED 178
EV L PS PP + + P + AK+A+ ++ V+PQ E +D
Sbjct: 248 EVVEELKVPSAPPYIPSPPPSPPRPPPAKQAKRKTNRVYQDVSPQEEKKERDD 300
>At1g02405.1 68414.m00187 proline-rich family protein contains
proline-rich region, INTERPRO:IPR000694
Length = 134
Score = 27.9 bits (59), Expect = 6.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 278 KDGTCSPEPLPPPP 319
K +C P PLPPPP
Sbjct: 73 KKSSCPPSPLPPPP 86
>At3g13110.1 68416.m01641 serine O-acetyltransferase (SAT-1)
identical to serine acetyltransferase (Sat-1) GI:1184048
[Arabidopsis thaliana]
Length = 391
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 254 PSVIMRAHKDGTCSPEPLPPPP 319
PS + K T SP P PPPP
Sbjct: 32 PSFVSSKFKHHTLSPPPSPPPP 53
>At1g53800.1 68414.m06123 expressed protein
Length = 568
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Frame = +2
Query: 2 RMSTLLEVCGPLSPPSTPPLMENK--VELPLKKIAAKRARESSSPPAG----LVTPQPSD 163
+ + +LE+ SP + L+E+K + + I + R+ +S G L++PQP+D
Sbjct: 376 KAAKVLEIAALKSPVAQASLLESKKLIAEATQLIKSLEMRQIASDEDGTYPFLLSPQPND 435
Query: 164 SEGE 175
SE E
Sbjct: 436 SESE 439
>At1g01030.1 68414.m00003 DNA-binding protein, putative similar to
DNA-binding proteins from [Arabidopsis thaliana] RAV1
GI:3868857, RAV2 GI:3868859; contains Pfam profile
PF02362: B3 DNA binding domain
Length = 358
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 302 PLPPPPAHGMNMLKTLKFKMNRGHSYSQ 385
PLPPPP+ L+ M G+ Y+Q
Sbjct: 272 PLPPPPSTAGKRLRLFGVNMECGNDYNQ 299
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,920,801
Number of Sequences: 28952
Number of extensions: 243736
Number of successful extensions: 1286
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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