Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d09r
         (792 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    25   0.92 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    25   0.92 
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    23   2.1  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   3.7  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   3.7  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   8.5  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 271 QITPESDASLKKIVTDFLAT 212
           ++TP  DAS K+I T F +T
Sbjct: 108 RLTPSKDASSKRIXTAFTST 127


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 520 GQKLRPHGTEPIPASWNRPPAS 585
           G  LR +G EP+P++   PP S
Sbjct: 197 GYGLRNYGPEPVPSTPYPPPGS 218


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/38 (18%), Positives = 19/38 (50%)
 Frame = -1

Query: 552 WLSTVRSQLLPSSVLTWMPLHSSCSTEECVLLSSSSKD 439
           W +  R +L   + +TW P + +   ++ ++  S  ++
Sbjct: 134 WFANARRRLKKENKMTWEPKNKTDDDDDALVSDSDDRE 171


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/36 (22%), Positives = 18/36 (50%)
 Frame = +1

Query: 61  YYSSHESTVDITAVLPSGEAFNLIWDCSTNSSFEIS 168
           +YS++     +T V  + +    +W+ S   SF ++
Sbjct: 131 FYSAYLVADKVTVVSKNNDDEQYVWESSAGGSFTVT 166


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 647 SDTFVEQLSFQEDLSISDGDHVGRNVS*HITGWVS 751
           +DTF++  S  ++ S++  D V RN    I  W S
Sbjct: 405 TDTFLDLWSDYQNKSLAAFDFVARNSDTPIILWTS 439


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -1

Query: 495 LHSSCSTEECVLLSSSSKDNMCPWLLRN 412
           L  S S E C L+   +     PW  R+
Sbjct: 172 LRQSSSLEHCTLIGEDNISAKNPWFPRH 199


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,859
Number of Sequences: 336
Number of extensions: 3840
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21480183
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)