Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d09r
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 33 0.20
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 33 0.20
11_05_0078 - 18906900-18907082,18907104-18907337,18907429-189076... 29 5.6
06_01_0651 + 4711369-4712431,4713069-4713763 28 7.4
03_06_0128 - 31879286-31879381,31879463-31879574,31879680-318797... 28 7.4
02_02_0741 + 13590883-13591582,13591955-13592250 28 7.4
01_06_1261 - 35826513-35828941,35829201-35829294 28 7.4
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010... 28 9.8
05_07_0101 - 27690927-27691208,27691695-27692474 28 9.8
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 33.5 bits (73), Expect = 0.20
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = -3
Query: 745 PAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAM 584
P D++ P IT+GQI+++ +L + I P INV S+SR+ +A + M
Sbjct: 374 PNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGM 427
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 33.5 bits (73), Expect = 0.20
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = -3
Query: 745 PAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAM 584
P D++ P IT+GQI+++ +L + I P INV S+SR+ +A + M
Sbjct: 344 PNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGM 397
>11_05_0078 -
18906900-18907082,18907104-18907337,18907429-18907653,
18907739-18907909,18907994-18908109,18908215-18908369,
18908450-18908573,18909007-18909107,18909215-18909297,
18909383-18909607,18909694-18909810,18910488-18910640
Length = 628
Score = 28.7 bits (61), Expect = 5.6
Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 2/153 (1%)
Frame = -3
Query: 619 SRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRGMRLTELL-KQ 443
S G AA T A + AGS+ A+ A FG+ M ++E L K
Sbjct: 309 SSAGPAASTSAGSETAGSITYPAARCGVTALRTTFGTVARTGV-------MSISESLDKL 361
Query: 442 GQYVPMAIEEQVAIIYCGVRGHLDKLDP-SKITAFEKEFTQHIKTSHQGLLSTIAKDGQI 266
G + AI+ A++ +RG D DP S+ A E F I+ G L + + ++
Sbjct: 362 GPFCRSAID--CAVVLDAIRGK-DAGDPSSREVAIEDPFHVDIRQLTVGYLD--SAEMEV 416
Query: 265 TPESDASLKKIVTDFLATFTQSQ*TSLRNLTCD 167
A K+V F +T S+ N+T D
Sbjct: 417 VHVLSAKGVKLV-PFKLNYTVQSVQSILNITMD 448
>06_01_0651 + 4711369-4712431,4713069-4713763
Length = 585
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -3
Query: 445 QGQYVPMAIEEQVAIIY-CGVRGHLDKLDPSKITAFEKE 332
+GQ V + + +A Y CGV GH D L F +E
Sbjct: 376 KGQAVALRVSADMAAAYRCGVEGHQDSLYAHSFRQFYRE 414
>03_06_0128 -
31879286-31879381,31879463-31879574,31879680-31879747,
31880959-31881072,31881207-31881247,31881340-31881393,
31881785-31881866,31882063-31882116
Length = 206
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 662 LQRYPTSHQRRSVCIACRIC 603
L+RYPT +R CIAC++C
Sbjct: 97 LRRYPTGEER---CIACKLC 113
>02_02_0741 + 13590883-13591582,13591955-13592250
Length = 331
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -3
Query: 394 CGVRGHLDKLDPSKITAF--EKEFTQHIKTSHQGLLSTIAKDGQITPESDAS 245
CG +GH + P K+ A EK+ Q + ++ ST KDG + P S A+
Sbjct: 96 CGEQGHYVRNCPWKVFARSPEKDEKQCLGSNQAPSQSTDKKDGTLQPNSGAN 147
>01_06_1261 - 35826513-35828941,35829201-35829294
Length = 840
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +2
Query: 362 VQLVEVTADTAVNDGDLFLNSHGHILSLLEELSKTHSSVEQLLCSGIQVRTELGKS 529
++L+++ ADT DL+ S +++ +EE T+ S + L +V EL KS
Sbjct: 41 IKLIDIEADTFARKADLYFKSRPDLINHVEE---TYRSYQALADRYDRVSGELHKS 93
>11_06_0340 -
22500411-22500566,22500660-22500783,22500914-22501080,
22501157-22501336,22501544-22502427,22502728-22502843,
22503745-22504217
Length = 699
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 662 LQRYPTSHQRRSVCIACRICCSDQGYEAGGRF 567
L+ Y TS+ +S+ + CR C GY A RF
Sbjct: 438 LKAYITSYTAKSISV-CRESCGGHGYAAVNRF 468
>05_07_0101 - 27690927-27691208,27691695-27692474
Length = 353
Score = 27.9 bits (59), Expect = 9.8
Identities = 22/93 (23%), Positives = 39/93 (41%)
Frame = -3
Query: 457 ELLKQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITAFEKEFTQHIKTSHQGLLSTIAK 278
E+L+ Y P + CGV G + DP I+ T ++ +G S+ A+
Sbjct: 181 EMLRVNHYPPCLLPPGRDRDECGVTGFGEHTDPQIISVLRSNCTAGLQILLRGDYSSPAR 240
Query: 277 DGQITPESDASLKKIVTDFLATFTQSQ*TSLRN 179
+ P+ D+ V D L T + S+++
Sbjct: 241 WVPVPPDPDSFFVN-VGDSLQVLTNGRFRSVKH 272
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,879,290
Number of Sequences: 37544
Number of extensions: 455393
Number of successful extensions: 1244
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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