Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d09r
         (792 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                191   6e-49
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)             112   3e-25
SB_42081| Best HMM Match : ATP-synt_ab (HMM E-Value=8.3e-07)          101   7e-22
SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.066
SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16)                   31   1.4  
SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)                   29   3.3  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   29   4.3  
SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_17274| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_52217| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_11423| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_19450| Best HMM Match : GTP_EFTU (HMM E-Value=7.9e-08)              28   7.5  
SB_9194| Best HMM Match : SWIM (HMM E-Value=0.01)                      28   7.5  
SB_41873| Best HMM Match : Homeobox (HMM E-Value=2.3e-29)              28   10.0 

>SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 313

 Score =  191 bits (465), Expect = 6e-49
 Identities = 93/179 (51%), Positives = 123/179 (68%)
 Frame = -3

Query: 742 AGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSM 563
           AGDVSA++PTNVISITDGQIFLE+ +F  GIRPA+N G+SVSRVG AAQTK +K+++G +
Sbjct: 134 AGDVSAFVPTNVISITDGQIFLESAMFNSGIRPAVNAGISVSRVGGAAQTKIIKKLSGGI 193

Query: 562 KLELAQYREVAAFAQFGSDLDAATQQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVR 383
           +  LAQYRE+AAFAQF SDLD AT++ L  G R+TEL+KQ QY PM+I +    +Y   R
Sbjct: 194 RTALAQYRELAAFAQFASDLDEATRKQLEHGQRVTELMKQKQYAPMSIADMSVSLYAAER 253

Query: 382 GHLDKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATFT 206
           G L  ++ +K+ AFE+    +    H  LL+ I + G    + D  LK  +  F AT T
Sbjct: 254 GFLVDIEVAKVGAFEQALIAYFNRDHAALLAKINEKGDFNDDIDGQLKAGIEKFKATQT 312


>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score =  112 bits (270), Expect = 3e-25
 Identities = 55/57 (96%), Positives = 56/57 (98%)
 Frame = -3

Query: 742 AGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVA 572
           AGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQ +
Sbjct: 280 AGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQTS 336


>SB_42081| Best HMM Match : ATP-synt_ab (HMM E-Value=8.3e-07)
          Length = 99

 Score =  101 bits (242), Expect = 7e-22
 Identities = 49/57 (85%), Positives = 53/57 (92%)
 Frame = -3

Query: 742 AGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVA 572
           AGDVSAYIPTNVISITDGQIFL++ELFY GIRPAINVGLSVSRVGSAAQ   MK++A
Sbjct: 42  AGDVSAYIPTNVISITDGQIFLDSELFYNGIRPAINVGLSVSRVGSAAQVAMMKKLA 98


>SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 35.1 bits (77), Expect = 0.066
 Identities = 20/54 (37%), Positives = 32/54 (59%)
 Frame = -3

Query: 745 PAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAM 584
           P  D++  IP     IT+GQI+++ +L  + I P INV  S+SR+  +A  + M
Sbjct: 275 PNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGM 328


>SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16)
          Length = 1003

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 23/66 (34%), Positives = 33/66 (50%)
 Frame = +2

Query: 95  QQYFRQAKLLI*YGTALQTRVLRSVTRQVT*TSLLRLGESS*EVCDDLLQGGVRLGGDLT 274
           ++ FRQAKLL+  G  L +R   +    +   SL+   + S +VC  LLQ     G D+ 
Sbjct: 10  ERRFRQAKLLVQLGDDLNSRSKETGRSPLVQASLIEDEDLSYKVCHWLLQE----GADIA 65

Query: 275 VFGDRG 292
           V  D G
Sbjct: 66  VRDDHG 71


>SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1922

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -3

Query: 343  FEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATF 209
            F ++ T+    S+QG +  I+  G   PESD++  +IV +  AT+
Sbjct: 952  FARKLTEEEVKSYQGPVHYISHHGLARPESDSTPLRIVFNMSATY 996


>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
          Length = 509

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -2

Query: 407 RHHLLRCPRSPRQAGPLQNH-CLREGIHSTHQN*PPGSSLHDR-QRRSDHPRV*RLLEED 234
           RH     PR      P ++H C R  + + H+   P   LH    R S+H R+ R L  +
Sbjct: 230 RHLHCHRPRLSNHHRPSRHHHCHRPRLSNHHR---PSRHLHCHCPRLSNHHRLSRHLHSN 286

Query: 233 RHRLPSYFHP 204
           R RL  + HP
Sbjct: 287 RLRLSIHHHP 296


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -3

Query: 634  VGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAAT 491
            +G+S  R     + +  K+V  S + E+A+  EV AFA   S+ D AT
Sbjct: 1770 LGISEEREQETEELEEHKEVVESEETEMAEEEEVPAFADIPSE-DTAT 1816


>SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1634

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -3

Query: 343 FEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATF 209
           F ++ T+    S+QG +  I+  G   PESD++  +IV +  AT+
Sbjct: 620 FARKLTEEEVKSYQGPVHYISHHGVARPESDSTPLRIVFNTSATY 664


>SB_17274| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -3

Query: 343 FEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATF 209
           F ++ T+    S+QG +  I+  G   PESD++  +IV +  AT+
Sbjct: 3   FARKLTEEEVKSYQGPVHYISHHGVARPESDSTPLRIVFNTSATY 47


>SB_52217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -3

Query: 379 HLDKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIV 230
           H D L  SKI A E  FTQ  +  ++ + +   K G    ESD+  ++IV
Sbjct: 30  HFDALQ-SKIAAMELRFTQREEDLNRIINTAQIKSGMEKEESDSRWRQIV 78


>SB_11423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 67  SSHESTVDITAVLPSGEAFNLIWDCSTNSSFEISHTSSYVN 189
           ++H+S  D T V  SG   ++     T  S+ ++ TSSYVN
Sbjct: 309 AAHQSVEDSTGVQQSGLGNHI--GAHTGDSYHLTQTSSYVN 347


>SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -3

Query: 379  HLDKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIV 230
            H D L  SKI A E  FTQ  +  ++ + +   K G    ESD+  ++IV
Sbjct: 1061 HFDALQ-SKIAAMELRFTQREEDLNRIINTAQIKSGMEKEESDSRWRQIV 1109


>SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1015

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 502  PSQNRTGQKLRPHGTEPIPASWNRPPAS 585
            P+Q R+GQ  R  G  P+PAS +RP  S
Sbjct: 953  PAQ-RSGQGKRDQGNAPVPASRSRPVPS 979


>SB_19450| Best HMM Match : GTP_EFTU (HMM E-Value=7.9e-08)
          Length = 926

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
 Frame = +2

Query: 281 GDRGEKTLVASFDVLSEFLLEGSDFGGVQLVEVTADTAVNDGDLFLN----SHGHILSLL 448
           GD GE   +   DV+ E +++       +L+EV AD     GDLFL     S   I++ +
Sbjct: 696 GDNGE---IVREDVIPEDMVDECRKRRQELIEVVADVDPELGDLFLEEVKPSESQIIAAI 752

Query: 449 EE--LSKTHSSV---EQLLCSGIQVRTELGKS 529
               + +T + V     L   G+QV  ++ KS
Sbjct: 753 RRATIERTFTPVFVGSALKNKGVQVPHQIDKS 784


>SB_9194| Best HMM Match : SWIM (HMM E-Value=0.01)
          Length = 701

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 21/73 (28%), Positives = 33/73 (45%)
 Frame = +3

Query: 465 RIPLLSSCCVAASKSEPNWAKAATSRY*ANSSFMEPATCFIALV*AADPTRDTDRPTLMA 644
           R+P    C V  SKSE  W + +      N        C  +   +AD  ++T+R TL  
Sbjct: 470 RLPCKHICAVFLSKSEWGWERLSPLCT-QNPLLSLDELCISSSPPSAD-CKNTERVTLYR 527

Query: 645 GRIPL*NSSVSKK 683
            R+P   + +S+K
Sbjct: 528 ARVPRQKTLISEK 540


>SB_41873| Best HMM Match : Homeobox (HMM E-Value=2.3e-29)
          Length = 651

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 535 PHGTEPIPASWNRPPAS*PWSEQQI 609
           P G++P+ +SWN P    PW  Q +
Sbjct: 452 PRGSQPLQSSWNPP----PWPRQNV 472


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,779,746
Number of Sequences: 59808
Number of extensions: 506909
Number of successful extensions: 1236
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)