Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d09r
(792 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 306 1e-83
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 306 1e-83
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 306 1e-83
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 34 0.10
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 33 0.18
U28928-1|AAA68334.3| 589|Caenorhabditis elegans Anchor cell fus... 29 3.8
EF205023-1|ABP04049.1| 589|Caenorhabditis elegans anchor cell f... 29 3.8
AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trn... 29 5.0
AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trn... 29 5.0
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 306 bits (751), Expect = 1e-83
Identities = 147/178 (82%), Positives = 164/178 (92%)
Frame = -3
Query: 742 AGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSM 563
AGDVSAYIPTNVISITDGQIFLETELFYKG+RPAINVGLSVSRVGSAAQTKAMKQVAGSM
Sbjct: 332 AGDVSAYIPTNVISITDGQIFLETELFYKGVRPAINVGLSVSRVGSAAQTKAMKQVAGSM 391
Query: 562 KLELAQYREVAAFAQFGSDLDAATQQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVR 383
KLELAQYREVAAFAQFGSDLDA+TQQLLNRG+RLTELLKQGQYVPM IEEQV +IY GV+
Sbjct: 392 KLELAQYREVAAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMGIEEQVGVIYAGVK 451
Query: 382 GHLDKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATF 209
G+LDK+DPS IT FEKEF H+++S Q LL TI ++GQI+P++DA LK +V +FLATF
Sbjct: 452 GYLDKVDPSAITKFEKEFLAHLRSSQQALLKTIREEGQISPQTDAQLKDVVVNFLATF 509
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 306 bits (751), Expect = 1e-83
Identities = 147/178 (82%), Positives = 164/178 (92%)
Frame = -3
Query: 742 AGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSM 563
AGDVSAYIPTNVISITDGQIFLETELFYKG+RPAINVGLSVSRVGSAAQTKAMKQVAGSM
Sbjct: 324 AGDVSAYIPTNVISITDGQIFLETELFYKGVRPAINVGLSVSRVGSAAQTKAMKQVAGSM 383
Query: 562 KLELAQYREVAAFAQFGSDLDAATQQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVR 383
KLELAQYREVAAFAQFGSDLDA+TQQLLNRG+RLTELLKQGQYVPM IEEQV +IY GV+
Sbjct: 384 KLELAQYREVAAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMGIEEQVGVIYAGVK 443
Query: 382 GHLDKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATF 209
G+LDK+DPS IT FEKEF H+++S Q LL TI ++GQI+P++DA LK +V +FLATF
Sbjct: 444 GYLDKVDPSAITKFEKEFLAHLRSSQQALLKTIREEGQISPQTDAQLKDVVVNFLATF 501
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 306 bits (751), Expect = 1e-83
Identities = 147/178 (82%), Positives = 164/178 (92%)
Frame = -3
Query: 742 AGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSM 563
AGDVSAYIPTNVISITDGQIFLETELFYKG+RPAINVGLSVSRVGSAAQTKAMKQVAGSM
Sbjct: 359 AGDVSAYIPTNVISITDGQIFLETELFYKGVRPAINVGLSVSRVGSAAQTKAMKQVAGSM 418
Query: 562 KLELAQYREVAAFAQFGSDLDAATQQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVR 383
KLELAQYREVAAFAQFGSDLDA+TQQLLNRG+RLTELLKQGQYVPM IEEQV +IY GV+
Sbjct: 419 KLELAQYREVAAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMGIEEQVGVIYAGVK 478
Query: 382 GHLDKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATF 209
G+LDK+DPS IT FEKEF H+++S Q LL TI ++GQI+P++DA LK +V +FLATF
Sbjct: 479 GYLDKVDPSAITKFEKEFLAHLRSSQQALLKTIREEGQISPQTDAQLKDVVVNFLATF 536
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 34.3 bits (75), Expect = 0.10
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = -3
Query: 745 PAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAM 584
P D++ IP IT+GQI+++ +L + I P INV S+SR+ +A + M
Sbjct: 337 PNDDITHPIPDLTGYITEGQIYVDRQLHNRLIYPPINVLPSLSRLMKSAIGEGM 390
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 33.5 bits (73), Expect = 0.18
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = -3
Query: 745 PAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAM 584
P D++ IP IT+GQI+++ +L + I P I+V S+SR+ +A + M
Sbjct: 349 PNNDITHPIPDLTGYITEGQIYIDKQLHKRLIYPPIDVLPSLSRLMKSAVGEGM 402
>U28928-1|AAA68334.3| 589|Caenorhabditis elegans Anchor cell fusion
failure protein1 protein.
Length = 589
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 522 PSSVLTWMPLHSSCSTEECVLLSSSSKDNMCPWLL 418
P +W HS CS EC L S D + PW++
Sbjct: 489 PRQEQSWSKGHSPCSQAECNSLKSGVSD-LFPWIM 522
>EF205023-1|ABP04049.1| 589|Caenorhabditis elegans anchor cell
fusion failure-1 protein.
Length = 589
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 522 PSSVLTWMPLHSSCSTEECVLLSSSSKDNMCPWLL 418
P +W HS CS EC L S D + PW++
Sbjct: 489 PRQEQSWSKGHSPCSQAECNSLKSGVSD-LFPWIM 522
>AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform a protein.
Length = 909
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 428 GHILSLLEELSKTHSSVEQLLCSGIQVRTELGKSCDLTVL 547
G L L+EE K S V + LC + R+ + K +L L
Sbjct: 649 GKELKLMEEFGKLKSEVHEALCDSVDTRSVIEKFRELISL 688
>AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform b protein.
Length = 908
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 428 GHILSLLEELSKTHSSVEQLLCSGIQVRTELGKSCDLTVL 547
G L L+EE K S V + LC + R+ + K +L L
Sbjct: 648 GKELKLMEEFGKLKSEVHEALCDSVDTRSVIEKFRELISL 687
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,007,986
Number of Sequences: 27780
Number of extensions: 367765
Number of successful extensions: 1142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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