Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d09r
(792 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 216 1e-56
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 33 0.16
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 33 0.16
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 33 0.16
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 33 0.16
At1g50730.1 68414.m05705 expressed protein 31 0.66
At3g12360.1 68416.m01541 ankyrin repeat family protein contains ... 29 2.7
At2g37050.1 68415.m04546 leucine-rich repeat family protein / pr... 29 3.5
At1g79010.1 68414.m09213 NADH-ubiquinone oxidoreductase 23 kDa s... 28 6.2
At1g16700.1 68414.m02000 NADH-ubiquinone oxidoreductase 23 kDa s... 28 6.2
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r... 28 8.2
At1g31390.1 68414.m03843 meprin and TRAF homology domain-contain... 28 8.2
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP synthase
alpha chain, mitochondrial (EC 3.6.3.14) {Brassica
campestris}; contains Pfam profiles PF00006: ATP synthase
alpha/beta family nucleotide-binding domain, PF00306: ATP
synthase ab C terminal, PF02874: ATP synthase alpha/beta
family beta-barrel domain
Length = 777
Score = 216 bits (528), Expect = 1e-56
Identities = 113/170 (66%), Positives = 130/170 (76%), Gaps = 1/170 (0%)
Frame = -3
Query: 742 AGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSM 563
AGDVSAYIPTNVISITDGQI LETELFY+GIRPAINVGLSVSRVGSAAQ KAMKQV GS
Sbjct: 604 AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSS 663
Query: 562 KLELAQYREVAAFAQFGSDLDAATQQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVR 383
KLELAQYREVAAFAQFGSDLDAATQ LLNRG RLTE+ KQ QY P+ IE+Q+ +IY V
Sbjct: 664 KLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKQILVIYAAVN 723
Query: 382 GHLDKLDPSKITAFEKEFTQHIKTS-HQGLLSTIAKDGQITPESDASLKK 236
G D++ +I+ +EK +K Q L + + ++ P DA LK+
Sbjct: 724 GFCDRMPLDRISQYEKAIPNSVKPELLQALKGGLTNERKMEP--DAFLKE 771
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = -3
Query: 745 PAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAM 584
P D++ P IT+GQI+++ +L + I P INV S+SR+ +A + M
Sbjct: 334 PNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGM 387
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = -3
Query: 745 PAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAM 584
P D++ P IT+GQI+++ +L + I P INV S+SR+ +A + M
Sbjct: 334 PNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGM 387
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = -3
Query: 745 PAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAM 584
P D++ P IT+GQI+++ +L + I P INV S+SR+ +A + M
Sbjct: 333 PNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGM 386
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = -3
Query: 745 PAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAM 584
P D++ P IT+GQI+++ +L + I P INV S+SR+ +A + M
Sbjct: 332 PNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGM 385
>At1g50730.1 68414.m05705 expressed protein
Length = 1013
Score = 31.5 bits (68), Expect = 0.66
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Frame = -3
Query: 502 DAATQQLLNR---GMRLTELLKQGQYVPMAIEE--QVAIIYCGVRGHLDKLDPSKITAFE 338
D + Q+LN G RL+E Q ++ I+E Q A Y + +L +D +
Sbjct: 448 DCSFSQVLNYRLLGNRLSEGKSQEGFLSSLIDEVIQAASQYQSLYDYLRIMDAYVDLMLQ 507
Query: 337 KEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATFTQSQ 197
+ H+ ++S +A+D ++ E ASL+ I+ L+ F Q
Sbjct: 508 NKMENHLDALLDDIVS-LARDKFLSEEEQASLQSIILKLLSHFENLQ 553
>At3g12360.1 68416.m01541 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 590
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Frame = -3
Query: 646 PAINVGLSVSRVGSAAQTKAMKQVAG---SMKLELAQYR-EVAAFAQFGSDLDAATQQLL 479
PA+ + S R+ A + K +KQV G +L LA R ++AA Q D+++ + +L
Sbjct: 46 PALVLSNSGKRMDQAGKKKYVKQVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGIL 105
Query: 478 NRGMRLTELLKQGQYVPMAIEE--QVAIIYCGVRGHLD 371
+ E+ + + + E + A+ +GHLD
Sbjct: 106 SGEEFDAEVAEIRASIVNEVNELGETALFTAADKGHLD 143
>At2g37050.1 68415.m04546 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 934
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = -3
Query: 706 ISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA-AQTKAMKQVAGSMKLELAQ----Y 542
I I++ I EL + P ++V LS + G T ++Q++GSM + Y
Sbjct: 129 IVISETYIIETAELVFLASSPTVSVCLSNATTGQPFISTLELRQLSGSMYGSMLSEDRFY 188
Query: 541 REVAAFAQFGSDLDAATQ 488
VAA FG++ +A+ +
Sbjct: 189 LSVAARINFGAESEASVR 206
>At1g79010.1 68414.m09213 NADH-ubiquinone oxidoreductase 23 kDa
subunit, mitochondrial (TYKY) identical to SP|Q42599
NADH-ubiquinone oxidoreductase 23 kDa subunit,
mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
(Complex I-23KD) (CI-23KD) (Complex I- 28.5KD)
(CI-28.5KD) {Arabidopsis thaliana}
Length = 222
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 662 LQRYPTSHQRRSVCIACRIC 603
L+RYPT +R CIAC++C
Sbjct: 113 LRRYPTGEER---CIACKLC 129
>At1g16700.1 68414.m02000 NADH-ubiquinone oxidoreductase 23 kDa
subunit, mitochondrial, putative very strong similarity
to SP|Q42599 NADH-ubiquinone oxidoreductase 23 kDa
subunit, mitochondrial precursor (EC 1.6.5.3) (EC
1.6.99.3) (Complex I-23KD) (CI-23KD) (Complex I- 28.5KD)
(CI-28.5KD) {Arabidopsis thaliana}; contains Pfam
profile PF00037: iron-sulfur cluster-binding protein
Length = 222
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 662 LQRYPTSHQRRSVCIACRIC 603
L+RYPT +R CIAC++C
Sbjct: 113 LRRYPTGEER---CIACKLC 129
>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
factory-related similar to RNA helicase GB:AAF03534
Length = 1317
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3
Query: 337 KEFTQHIKTSHQGLLSTIAKDGQIT 263
++ QH T H+GLLST KDG I+
Sbjct: 940 QQLFQHCHTHHEGLLST-KKDGMIS 963
>At1g31390.1 68414.m03843 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 268
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 245 GGVRLGGDLTVFGDRGEKTLVASFDVLSEFLL--EGSDFGGVQLVEVTADTAVN 400
GG + GD+ + + G +V DVL E LL E D G Q++ ++ N
Sbjct: 120 GGFLVNGDVKIVVEVGVLEVVGKSDVLEETLLVHESIDINGFQVLPSQVESVNN 173
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,191,616
Number of Sequences: 28952
Number of extensions: 345837
Number of successful extensions: 944
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -