Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d09f
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 214 1e-56
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 44 2e-05
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 32 0.062
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 26 5.3
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 7.1
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 25 7.1
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 25 7.1
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 9.3
SPCC1450.05c |rox3|med19|RNA polymerase II holoenzyme mediator c... 25 9.3
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 9.3
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 214 bits (522), Expect = 1e-56
Identities = 102/141 (72%), Positives = 120/141 (85%)
Frame = +3
Query: 222 EISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNL 401
E+ +ILEERI GA +A + E+GRVLSIGDGIAR+ GL N+QAEE+VEFSSG+KGMALNL
Sbjct: 35 EVPSILEERIRGAYNQAQMMESGRVLSIGDGIARISGLSNVQAEELVEFSSGIKGMALNL 94
Query: 402 EPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSR 581
E D VG V+FGND+L++EG++VKRT IVDVPVGE +LGRVVDALGNPIDGKGPI T R
Sbjct: 95 EADTVGCVLFGNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGPIKTTER 154
Query: 582 MRVGIKAPGIIPRVSVREPMQ 644
RV +KAPGI+PR SV EPMQ
Sbjct: 155 RRVQLKAPGILPRTSVCEPMQ 175
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 44.0 bits (99), Expect = 2e-05
Identities = 20/62 (32%), Positives = 35/62 (56%)
Frame = +3
Query: 420 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 599
+ + G + L++ G V TG+ + +PVG LGR+++ +G P+D +GPI +
Sbjct: 108 IAMDGTEGLVR-GTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHAD 166
Query: 600 AP 605
AP
Sbjct: 167 AP 168
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 32.3 bits (70), Expect = 0.062
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +3
Query: 474 TGAIVDVPVGEQILGRVVDALGNPIDGKGP 563
TG + +PV E +LGRV + G PID KGP
Sbjct: 92 TGHSMRIPVSEDMLGRVFNGSGLPID-KGP 120
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 360 PSPQPGCSSSHKHERYHHQCSRH-DQSLLDQPWAR 259
P P G HK ++ CS H D S+ ++P A+
Sbjct: 405 PVPHNGTKPDHKPWKHEEHCSCHEDHSVHERPSAK 439
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 506 LSDGNVYDSTSTLDNISFLDKLVIT 432
L GN+Y+STS + +S LD IT
Sbjct: 49 LEVGNIYNSTSASEILSTLDAKYIT 73
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -3
Query: 523 TRPRICSPTGTSTIAP 476
TRPR+ +P+ +ST+ P
Sbjct: 55 TRPRVSAPSSSSTVVP 70
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 181 HLANYMSQPPTKLPRSPPSSKRGSLEP 261
H +Y+S P SPP+SK S EP
Sbjct: 113 HQNDYISSPHADFSFSPPASKIQSHEP 139
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 169 QWPWHLANYMSQPPTKLPRSPPSSK 243
Q P H N+ S PP P SP SSK
Sbjct: 687 QAPEHARNF-SSPPFTRPASPSSSK 710
>SPCC1450.05c |rox3|med19|RNA polymerase II holoenzyme mediator
complex subunit Med19 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 138
Score = 25.0 bits (52), Expect = 9.3
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 483 IVDVPVGEQIL--GRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIP 617
I D+P +IL + L NPI + PID + V PGIIP
Sbjct: 59 IQDLPGYNEILRDNTIKQWLTNPIREEVPIDIEFLHHVFSVEPGIIP 105
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -2
Query: 131 RQAPGYRASNTSGDQRHFSQTYNCGRRKASYSARDS 24
+Q +++ DQ ++ YN R ++SARDS
Sbjct: 378 QQYKAWKSQPKDRDQNQGNRAYNPPNRNQAFSARDS 413
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,972
Number of Sequences: 5004
Number of extensions: 55620
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -