Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d09f
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)             152   2e-37
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)                53   2e-07
SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_14021| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_41865| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_9053| Best HMM Match : TIG (HMM E-Value=0)                          29   4.3  
SB_53572| Best HMM Match : efhand (HMM E-Value=0.0053)                 29   4.3  
SB_49877| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_25334| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_24092| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               28   7.5  
SB_20376| Best HMM Match : zf-piccolo (HMM E-Value=5.3)                28   7.5  
SB_35903| Best HMM Match : Carn_acyltransf (HMM E-Value=1.9e-13)       27   9.9  
SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         27   9.9  
SB_19780| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_53415| Best HMM Match : efhand (HMM E-Value=2.7e-12)                27   9.9  
SB_34234| Best HMM Match : Galactosyl_T (HMM E-Value=0.0098)           27   9.9  
SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)             27   9.9  

>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score =  152 bits (369), Expect = 2e-37
 Identities = 73/85 (85%), Positives = 79/85 (92%)
 Frame = +3

Query: 387 MALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPI 566
           MALNLEPDNVGVVVFGND+LIKEGDIVKRTGAIVDVPVGE++LGRVVDALGNPIDGKGP 
Sbjct: 1   MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGPT 60

Query: 567 DTKSRMRVGIKAPGIIPRVSVREPM 641
              +R RVG+KAPGIIPR SV+EPM
Sbjct: 61  G-GTRARVGVKAPGIIPRTSVKEPM 84


>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 23/75 (30%), Positives = 44/75 (58%)
 Frame = +3

Query: 420 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 599
           + + G + LI+ G     TG  + +PVG + LGR+++ +G PID +GP++T  R  +  +
Sbjct: 124 IAMDGTEGLIR-GQKCVDTGGPITIPVGPETLGRIINVIGEPIDERGPVETDKRAAIHAE 182

Query: 600 APGIIPRVSVREPMQ 644
           AP  +   + +E ++
Sbjct: 183 APEFVEMSTEQEILE 197


>SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1659

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 512  DLLSDGNVYDSTSTLDNISFLDKLVITKYYHTHIVRF 402
            D LSDG+    ++T  N  F+D+++   + HT+I RF
Sbjct: 1175 DALSDGS---KSNTSGNYGFMDQIMALSWIHTNIARF 1208


>SB_14021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -1

Query: 324 HERY-HHQCSRHDQSLLD 274
           HERY HHQ +RHD   LD
Sbjct: 157 HERYQHHQTTRHDDQTLD 174


>SB_41865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 116 YRASNTSGDQRHFSQTYNCGRRKASYSARDSLR 18
           +   N+S +Q HFS  +     KASY++ ++ R
Sbjct: 36  FNTCNSSSNQEHFSLGFTTSPEKASYTSNETKR 68


>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
          Length = 2990

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -2

Query: 443  LVITKYYHTHIVRFQVKGHSLEA*GELHHLLSLDVLQAINTSDTITNAQDTTSLF 279
            L +T  Y T +V F  K H+     +L  L+  D L +    + ITN   T  +F
Sbjct: 2403 LSVTNQYGTELVPFHEKDHTHPLGHQLSLLMKEDYLMSYVGGEQITNISYTGKIF 2457


>SB_53572| Best HMM Match : efhand (HMM E-Value=0.0053)
          Length = 263

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 509 DPWACSRCFG*PY*WQGTNRHEIPYEGRY 595
           D  ACSR  G    W G++ +EIPY G +
Sbjct: 83  DTSACSRIAGNTGYWDGSDTNEIPYFGAW 111


>SB_49877| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 504 EQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPG 608
           E ILGR+   + NP+ G+G   T S ++  I A G
Sbjct: 211 ETILGRLPSFMENPLAGEGEFSTHSMLKDDIYAIG 245


>SB_25334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 363 PPSPQPGCSSSHKHERYHHQCSRHDQSLLDQPWARLQGSSL-RGWWRSRQ 217
           PP PQP    +H+    H+   +HD  L+++P+A      + + +W  R+
Sbjct: 66  PPKPQP----THQWRDLHNNHLQHDARLINRPYASEAKKGIDQAYWDRRK 111


>SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 357 SPQPGCSSSHKHERYHHQCSRH 292
           SP P  SS H H R H+ C  H
Sbjct: 61  SPLPLSSSHHHHHRRHYLCHHH 82


>SB_24092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +3

Query: 363 EFSSGLKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRV 524
           ++   +K +   ++P   G+VV G D  + E D+ K    I+ V        RV
Sbjct: 36  DYEGQIKKLMQYIDPSLDGIVVAGGDGTLLEADVSKIPIGIIPVGTNNTFFNRV 89


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 348 PGCSSSHKHERYHHQCSRHDQSL 280
           PG    H+H R+HH   +H++ +
Sbjct: 922 PGKKHKHRHRRHHHHRRQHNRKI 944


>SB_20376| Best HMM Match : zf-piccolo (HMM E-Value=5.3)
          Length = 515

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 608 TWRLNTDPHTGFRVDWSLAINRVTQSIYYTPK 513
           TWR +  P   FR +W+L +   T   +  PK
Sbjct: 377 TWRQHRKPKLPFRANWALKVTSYTWRQHRKPK 408


>SB_35903| Best HMM Match : Carn_acyltransf (HMM E-Value=1.9e-13)
          Length = 507

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
 Frame = -2

Query: 614 NDTWRLNT--DPHTGFRVDWSLAINRVTQSIYYTPKDLLSDGNVYDST---STLDNISFL 450
           +DT  LN   D H    +D +  +N +  + Y    D     N  D T   + +D+  +L
Sbjct: 375 DDTHYLNATDDTHYLNAIDDTHYLNAIDDTHYLNAIDDTHYLNAIDDTHYLNAIDDTHYL 434

Query: 449 DKLVITKYYH----THIVRFQVKGHSLEA*GELHHLLSLDVLQAINTSD 315
           + +  T Y +    TH +      H L A  + H+L ++D    +N +D
Sbjct: 435 NAIDDTHYLNAIDDTHYLNAIDDTHYLNAIDDTHYLNAIDDTHYLNATD 483


>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 378 GLRRTPPSPQPGCS 337
           GL   PPSPQPGC+
Sbjct: 724 GLPPPPPSPQPGCA 737


>SB_19780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 29  RERSNWLSVCHNYKFVKNVADLRSYCW 109
           +E    L +C +YK +KN  + +S+ W
Sbjct: 225 KEVGELLKMCSSYKILKNFTEAKSHTW 251


>SB_53415| Best HMM Match : efhand (HMM E-Value=2.7e-12)
          Length = 923

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 348 PGCSSSHKHERYHHQCSRHDQSLLDQPWARLQGSSLRG 235
           P    SHK +RY  +C+RH + L   P  RL   S+ G
Sbjct: 490 PRVLDSHKRDRYRGRCTRHPRVL---PTPRLYVVSIFG 524


>SB_34234| Best HMM Match : Galactosyl_T (HMM E-Value=0.0098)
          Length = 1028

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 417 GVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDAL 536
           G+++FG D +    +IVKR   +   P G+Q +G  ++AL
Sbjct: 207 GLIIFGRDFV---DEIVKRNQTLQCHPFGDQAIGLWINAL 243



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 417 GVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDAL 536
           G+++FG D +    +IVKR   +   P G+Q +G  ++AL
Sbjct: 488 GLIIFGRDFV---DEIVKRNQTLQCHPFGDQAIGLWINAL 524


>SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)
          Length = 646

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 390 ALNLEPDN-VGVVVFGNDKLIKEGDIVKR 473
           ALN+   N +G +   N K++ EGDIVKR
Sbjct: 248 ALNITNSNSLGEIFTRNGKMLVEGDIVKR 276


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,530,458
Number of Sequences: 59808
Number of extensions: 480542
Number of successful extensions: 1762
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1749
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)