Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d08f
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.17 |||transcriptional coactivator, multiprotein bridging ...   107   6e-25
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    29   0.32 
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    26   1.7  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   3.9  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    25   3.9  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     25   5.2  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    24   9.1  

>SPBC83.17 |||transcriptional coactivator, multiprotein bridging
           factor Mbf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score =  107 bits (257), Expect = 6e-25
 Identities = 52/105 (49%), Positives = 69/105 (65%)
 Frame = +2

Query: 2   VNAARRQGIPVDTQQKYGAGTNKQHVTTKNTAKLDRETEELRHEKIPLDLGKLIMQGRQA 181
           +N+ARR G  V T++KY  G   Q    ++  K+DRE E          + + I +GRQA
Sbjct: 29  INSARRAGAIVGTEKKYATGNKSQDPAGQHLTKIDRENEVKPPSTTGRSVAQAIQKGRQA 88

Query: 182 KGMSQKDLATKICEKPQIVNDYEAGRGIPNNIVLGKIERAIGIKL 316
           KG +QKDL+ +I EKPQ+VNDYE+GR IPN  VL K+ERA+GIKL
Sbjct: 89  KGWAQKDLSQRINEKPQVVNDYESGRAIPNQQVLSKMERALGIKL 133


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 28.7 bits (61), Expect = 0.32
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 5   NAARRQGIPVDTQQKYGAGTN-KQHVTTKNTAKLDRETEELRHEKIPL 145
           N   R+G+P   +++   G N     T+ NT   D  + +LR EKI L
Sbjct: 456 NTTSRKGVPPSKRRRVRGGNNATSRTTSDNTDANDSFSRDLRLEKILL 503


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 310 YSNCPFNFSKNNVIWNATTSFI 245
           Y  C F+FSK+  +W     F+
Sbjct: 157 YQTCKFHFSKSQCVWTLYLEFL 178


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 277 NVIWNATTSFIIIYNL 230
           NV+W+ TTSFI I+ +
Sbjct: 357 NVLWSMTTSFINIWRI 372


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 80  TTKNTAKLDRETEELRHEKIPLDLGKLIMQGRQAKGMSQKD 202
           T K+  K    T  +  E    D+GK+I  G+    ++QK+
Sbjct: 281 TAKDPVKALTSTNNVEEEDPAEDIGKIIASGQTRAYLAQKE 321


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 307 SNCPFNFSKNNVIWNATTS 251
           SNC F F  + V WN+  S
Sbjct: 210 SNCKFRFDFSKVYWNSRLS 228


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 257 DQLHNHLQSVVFHKF*WRGLFDSFL*LVCLA 165
           DQL  H Q V+++ F W  L  S L +V +A
Sbjct: 457 DQLVTHNQKVLYNFFNWPSLPHSRLIVVAVA 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,460,922
Number of Sequences: 5004
Number of extensions: 26213
Number of successful extensions: 64
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)