Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d08f
(378 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0425 + 16975143-16975284,16975682-16975765,16977414-169774... 89 1e-18
06_03_0628 - 22909954-22910421 83 7e-17
03_06_0311 + 33054022-33054118,33056109-33056353,33057058-330573... 30 0.69
03_06_0716 - 35695158-35696795,35697075-35697288,35697290-356973... 28 2.1
08_02_1360 + 26391141-26391287,26392256-26392627,26393372-26393860 27 3.7
12_02_0920 + 24348423-24348531,24348625-24348779 27 6.5
04_04_1704 - 35481041-35481461,35481682-35481810,35482291-354823... 27 6.5
12_02_0179 - 14952398-14952511,14953333-14953356,14953543-149536... 26 8.6
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653... 26 8.6
06_03_0082 + 16363742-16364632 26 8.6
>08_02_0425 +
16975143-16975284,16975682-16975765,16977414-16977496,
16977610-16977652,16978311-16978378,16978954-16979043,
16981444-16981620,16982291-16982354,16982452-16982500,
16983399-16983858
Length = 419
Score = 88.6 bits (210), Expect = 1e-18
Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Frame = +2
Query: 2 VNAARRQGIPVDTQQKYGAGTNK--QHVTTKNTAKLDRETEELRHEKIPLDLGKLIMQGR 175
VNAARR G ++T +KY AGTNK T+ NT +LD +TE L HE++ DL K +MQ R
Sbjct: 32 VNAARRSGAEIETMKKYNAGTNKAASSGTSLNTKRLDDDTESLAHERVSSDLKKNLMQAR 91
Query: 176 QAKGMSQKDLATKICEKPQIVNDYEAG 256
K M+Q LA I EKPQ++ +YE+G
Sbjct: 92 LDKKMTQAQLAQMINEKPQVIQEYESG 118
>06_03_0628 - 22909954-22910421
Length = 155
Score = 83.0 bits (196), Expect = 7e-17
Identities = 45/106 (42%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Frame = +2
Query: 2 VNAARRQGIPVDTQQKYGAGTNKQHVTTKNTA-KLDRETEELRHEKIPLDLGKLIMQGRQ 178
VN A R G PV+T +K AGTNK A KLD TE ++ ++ I + R
Sbjct: 35 VNQAMRTGAPVETVRKAAAGTNKAAAGAAAPARKLDESTEPAGLGRVGAEVRGAIQKARV 94
Query: 179 AKGMSQKDLATKICEKPQIVNDYEAGRGIPNNIVLGKIERAIGIKL 316
AKG SQ +LA +I E+ Q+V +YE+G+ +P VL K+ERA+ +KL
Sbjct: 95 AKGWSQAELAKRINERAQVVQEYESGKAVPVQAVLAKMERALEVKL 140
>03_06_0311 +
33054022-33054118,33056109-33056353,33057058-33057398,
33057488-33057538,33057623-33057695,33058229-33058333,
33060124-33060206,33061209-33061249,33061659-33063120,
33063368-33064847,33064958-33065122,33065232-33065424,
33065502-33065613,33065702-33065849,33065951-33066148,
33066234-33066512,33066612-33066773,33066872-33067090,
33067481-33067612
Length = 1861
Score = 29.9 bits (64), Expect = 0.69
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 161 IMQGRQAKGMSQKDLATKICEKPQIVNDY 247
+M+ R +G SQK++ KICE +I NDY
Sbjct: 677 MMKQRGKRGTSQKNIYIKICE-TEIANDY 704
>03_06_0716 -
35695158-35696795,35697075-35697288,35697290-35697372,
35697695-35697865
Length = 701
Score = 28.3 bits (60), Expect = 2.1
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = -3
Query: 262 ATTSFIIIYNLWFF--TNFSGEVFLTHS 185
A F I+ LWF+ T F G VF+TH+
Sbjct: 91 ALIPFSILKLLWFYLQTTFKGRVFMTHA 118
>08_02_1360 + 26391141-26391287,26392256-26392627,26393372-26393860
Length = 335
Score = 27.5 bits (58), Expect = 3.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 35 DTQQKYGAGTNKQHVTTKNTAKLDRETE 118
D ++++ GTN+QHV + A+L R +
Sbjct: 233 DARRRFPPGTNEQHVLERAQAELSRRAD 260
>12_02_0920 + 24348423-24348531,24348625-24348779
Length = 87
Score = 26.6 bits (56), Expect = 6.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -1
Query: 360 CPPGGCSGWPLSFPRSF 310
C P C+GWP +SF
Sbjct: 16 CTPAACNGWPRRHQKSF 32
>04_04_1704 -
35481041-35481461,35481682-35481810,35482291-35482397,
35482515-35482583,35482825-35482936,35483013-35483131,
35483211-35483291,35483629-35483700,35484039-35484239,
35484442-35484528,35485284-35485523,35485991-35486455,
35487434-35487556,35487643-35487769,35487851-35487919,
35488061-35488189,35488628-35488722,35488808-35488876,
35489332-35489443,35489545-35489663,35489753-35489833,
35490898-35490969,35491052-35491267,35491524-35491601,
35491694-35491831,35492403-35492414,35492639-35492872,
35493076-35493130,35493222-35493352,35493813-35494546,
35494613-35494820
Length = 1634
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 200 DLATKICEKPQIVNDYEAGRGIP 268
D TKI E+ +IV D++ G G P
Sbjct: 640 DGTTKISERERIVKDFQEGPGAP 662
>12_02_0179 -
14952398-14952511,14953333-14953356,14953543-14953670,
14953765-14953891,14953930-14954013,14954245-14954397,
14954478-14954579,14955036-14955128,14955289-14955350,
14955395-14955522,14957053-14957291,14958040-14958471,
14958774-14958912,14960564-14960883
Length = 714
Score = 26.2 bits (55), Expect = 8.6
Identities = 12/54 (22%), Positives = 26/54 (48%)
Frame = +2
Query: 62 TNKQHVTTKNTAKLDRETEELRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICE 223
T+ Q T + ++ + ++ +EK+ + KL+MQ + S K L + +
Sbjct: 156 TDCQESTIEEGPHVEENSTDMENEKLSIRASKLVMQRKLTSLRSHKPLKANVVQ 209
>06_03_0793 +
24662506-24663512,24664470-24664787,24664996-24665323,
24665465-24665887,24665960-24666252,24666332-24666605,
24666856-24667358,24667464-24667785,24667875-24668220,
24668339-24668997,24669524-24669625,24669656-24670052,
24670155-24670270,24670360-24670386
Length = 1704
Score = 26.2 bits (55), Expect = 8.6
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Frame = +2
Query: 161 IMQGRQAKGMSQKDLATKICEKPQIVND----YEAGRGIPN---NIVLGKIERAIGI 310
++Q + M+ + KIC++PQ++ D Y+ PN IV G ++ A+G+
Sbjct: 398 VLQPSFLQKMTVLNFLEKICKEPQVIIDIFVNYDCDVDAPNIFERIVNGLVKTALGV 454
>06_03_0082 + 16363742-16364632
Length = 296
Score = 26.2 bits (55), Expect = 8.6
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -1
Query: 360 CPPGGCSGWPLSFP 319
CPP G GWPL P
Sbjct: 91 CPPEGLGGWPLLPP 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,391,678
Number of Sequences: 37544
Number of extensions: 166417
Number of successful extensions: 420
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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