Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d08f
         (378 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)         48   3e-06
SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)                     30   0.72 
SB_48195| Best HMM Match : DUF229 (HMM E-Value=0)                      29   1.3  
SB_40158| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.2  
SB_52558| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.2  
SB_6220| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0089)          27   3.8  
SB_52667| Best HMM Match : MRP-L47 (HMM E-Value=0.0013)                27   5.1  
SB_47476| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_46813| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_46519| Best HMM Match : DUF720 (HMM E-Value=0.49)                   27   5.1  
SB_20584| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_49670| Best HMM Match : TIR (HMM E-Value=1.2)                       27   5.1  
SB_16760| Best HMM Match : OmpA (HMM E-Value=0.72)                     27   5.1  
SB_14035| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_32327| Best HMM Match : ig (HMM E-Value=7.9e-23)                    27   6.7  
SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)                  27   6.7  
SB_56799| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_35761| Best HMM Match : DUF720 (HMM E-Value=0.47)                   26   8.8  

>SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)
          Length = 291

 Score = 47.6 bits (108), Expect = 3e-06
 Identities = 20/31 (64%), Positives = 25/31 (80%)
 Frame = +2

Query: 212 KICEKPQIVNDYEAGRGIPNNIVLGKIERAI 304
           K+ EKP ++ +YE G+ IPNN VLGKIERAI
Sbjct: 1   KVNEKPHVIMEYEQGKAIPNNQVLGKIERAI 31


>SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)
          Length = 893

 Score = 29.9 bits (64), Expect = 0.72
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +2

Query: 23  GIPVDTQQKYGAGTNKQHVTTKNTAKLDRETEELRHEKIPLDLGKLIMQG 172
           G PV   Q+   G + +++T +NT K   +T++    ++P   G +   G
Sbjct: 439 GPPVSQVQRLAPGNSTRNMTKENTGKETSKTQQPEQPRVPKSSGLITTAG 488


>SB_48195| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 1743

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 185 GMSQKDLATKICEKPQIVNDYEAGRGIPNNIVLGKIER 298
           G +Q D    +  KP++ N     RGIP NI++  ++R
Sbjct: 712 GATQVDYHCHVTPKPEVSNRNRGFRGIPLNIIILGLDR 749


>SB_40158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 256

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 15/72 (20%), Positives = 34/72 (47%)
 Frame = +2

Query: 68  KQHVTTKNTAKLDRETEELRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEKPQIVNDY 247
           + HVT      L+RE E+++  +  ++L + I     A G S  +++       + V+++
Sbjct: 40  RSHVTRNRVENLEREDEKIKESQAYVELTEYIKDSATADGKSLDEISAIYGSFLRNVSEF 99

Query: 248 EAGRGIPNNIVL 283
                +P+ + L
Sbjct: 100 SRLDALPSVVYL 111


>SB_52558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 726

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +2

Query: 137 IPLDLGKLIMQGRQAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNIVL 283
           + LD   + ++ +   G +Q DL   +  KP++++  +   GIP NI++
Sbjct: 210 VKLDEDFIQVETQLKSGGTQTDLHAHVSPKPEVLSRPKKDAGIPLNIII 258


>SB_6220| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0089)
          Length = 374

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 65  NKQHVTTKNTAKLDRETEEL--RHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEKPQIV 238
           N QHV  K T+ L    EEL  R EK+  +L +   +    +G  ++ L  ++ +K   +
Sbjct: 79  NVQHVVEKETSSLQSRIEELQSRMEKLKRELKRQKEKESTLQGEKER-LKEQLAQKDSAI 137

Query: 239 N 241
           N
Sbjct: 138 N 138


>SB_52667| Best HMM Match : MRP-L47 (HMM E-Value=0.0013)
          Length = 119

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/50 (22%), Positives = 26/50 (52%)
 Frame = +2

Query: 2   VNAARRQGIPVDTQQKYGAGTNKQHVTTKNTAKLDRETEELRHEKIPLDL 151
           ++ A+RQG+P+ + ++Y        +      + +R  +EL  ++ P D+
Sbjct: 15  MHEAKRQGVPMPSPERYHKVKKSMAMVKLVLGERERAIQELSQQQWPFDV 64


>SB_47476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 161 IMQGRQAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNIVLGKIERAIGIK 313
           +M G+ A    Q+ +   I    +  ++Y  G+ IPN  +  + ER IG++
Sbjct: 32  LMSGQAANAERQERIFNSIKRITKQTSNYHQGQIIPNLFIRLQAERQIGLQ 82


>SB_46813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 161 IMQGRQAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNIVLGKIERAIGIK 313
           +M G+ A    Q+ +   I    +  ++Y  G+ IPN  +  + ER IG++
Sbjct: 73  LMSGQAANAERQERIFNSIKRITKQTSNYHQGQIIPNLFIRLQAERQIGLQ 123


>SB_46519| Best HMM Match : DUF720 (HMM E-Value=0.49)
          Length = 1205

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 161 IMQGRQAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNIVLGKIERAIGIK 313
           +M G+ A    Q+ +   I    +  ++Y  G+ IPN  +  + ER IG++
Sbjct: 791 LMSGQAANAERQERIFNSIKRITKQTSNYHQGQIIPNLFIRLQAERQIGLQ 841


>SB_20584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 161 IMQGRQAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNIVLGKIERAIGIK 313
           +M G+ A    Q+ +   I    +  ++Y  G+ IPN  +  + ER IG++
Sbjct: 73  LMSGQAANAERQERIFNSIKRITKQTSNYHQGQIIPNLFIRLQAERQIGLQ 123


>SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 679

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 161 IMQGRQAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNIVLGKIERAIGIK 313
           +M G+ A    Q+ +   I    +  ++Y  G+ IPN  +  + ER IG++
Sbjct: 125 LMSGQAANAERQERIFNSIKRITKQTSNYHQGQIIPNLFIRLQAERQIGLQ 175


>SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 5   NAARRQGIPVD-TQQKYGAGTNKQHVTTKNTAKLDRETEELRHE 133
           NA +R+ +  D TQ + G GT K H+   +  K   + +E +HE
Sbjct: 109 NAEKREDVENDNTQGESGEGTRK-HIDNGDERKDTNDDDETKHE 151


>SB_49670| Best HMM Match : TIR (HMM E-Value=1.2)
          Length = 512

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 68  KQHVTTKNTAKLDRETEELRHEKIPLDLGKLIMQGRQAKGMS 193
           + HVT      L+RE E+++  +  ++L + I     A G S
Sbjct: 293 RSHVTRNRVENLEREDEKIKESQAYVELTEYIKDSATADGKS 334


>SB_16760| Best HMM Match : OmpA (HMM E-Value=0.72)
          Length = 933

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 161  IMQGRQAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNIVLGKIERAIGIK 313
            +M G+ A    Q+ +   I    +  ++Y  G+ IPN  +  + ER IG++
Sbjct: 873  LMSGQAANAERQERIFNSIKRITKQTSNYHQGQIIPNLFIRLQAERQIGLQ 923


>SB_14035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
 Frame = +2

Query: 2   VNAARRQGIPVDTQQKYGAGTNKQHVTTKNTAKLDRETEELR--HEKIPLDLGKLIMQGR 175
           V+ A    +P+D+ +      NKQ   T+   K D + E L   H+   L L        
Sbjct: 13  VDPAGPYEMPIDSDKPREPALNKQAAQTQIQDKADSQYESLHNDHKYHSLALQDRTNTNN 72

Query: 176 QAKGMSQKDL--ATKICEKPQIVNDYEAGR 259
           ++K +S+++L  A    E+P  ++    G+
Sbjct: 73  KSKVLSRENLGFAPAFAEQPSAISRQSLGK 102


>SB_32327| Best HMM Match : ig (HMM E-Value=7.9e-23)
          Length = 932

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 211 SGEVFLTHSFSLSALHYKFPQIKWY 137
           SG+V LT S SL      +P + WY
Sbjct: 718 SGDVILTRSASLRCSTEAYPPVTWY 742


>SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)
          Length = 873

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +2

Query: 35  DTQQKYGAGTNKQHVTTKNTAKLDRETEELRHEKIPLDLGKLIMQGRQAKGMSQKDLATK 214
           D  +K  A  +K     ++   L + +EEL+ E   L   KL+++ +Q  G+S K+   +
Sbjct: 265 DRVEKLEADASKYKDKLRDLEYLRKRSEELKEENELLYDNKLVLE-QQLLGLSAKEERIE 323

Query: 215 ICEK 226
           I E+
Sbjct: 324 ILEE 327


>SB_56799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 164 MQGRQAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNIVLGKIERAIGIK 313
           M G+ A    Q+ +   I    +  ++Y  G+ IPN  +  + ER IG++
Sbjct: 1   MSGQAANAERQERIFNSIKRITKQTSNYHQGQIIPNLFIRLQAERQIGLQ 50


>SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 378 REFRYFCPPGGCSGWPLSFPRS 313
           R FR+ CPP G S  P  F R+
Sbjct: 562 RRFRFNCPPFGISSAPEVFQRT 583


>SB_35761| Best HMM Match : DUF720 (HMM E-Value=0.47)
          Length = 414

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 164 MQGRQAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNIVLGKIERAIGIK 313
           M G+ A    Q+ +   I    +  ++Y  G+ IPN  +  + ER IG++
Sbjct: 1   MSGQAANAERQERIFNSIKRITKQTSNYHQGQIIPNLFIRLQAERQIGLQ 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,769,302
Number of Sequences: 59808
Number of extensions: 186172
Number of successful extensions: 568
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)