Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d08f
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95619-1|CAB09112.1|  156|Caenorhabditis elegans Hypothetical pr...   128   1e-30
Z69718-2|CAA93536.1|  139|Caenorhabditis elegans Hypothetical pr...    28   2.5  
Z99286-1|CAH60792.1|  311|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z82259-5|CAB05125.2|  353|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z81547-4|CAB04458.1|  368|Caenorhabditis elegans Hypothetical pr...    27   5.9  
U88314-11|AAP68950.1|  241|Caenorhabditis elegans Hypothetical p...    27   5.9  
U88314-10|AAP68949.1|  344|Caenorhabditis elegans Hypothetical p...    27   5.9  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    27   5.9  
AF067609-5|AAC17534.1|  644|Caenorhabditis elegans Hypothetical ...    27   5.9  
AF038608-4|AAU05594.2|  310|Caenorhabditis elegans Serpentine re...    27   5.9  
AF040660-8|AAN65288.1|  594|Caenorhabditis elegans Hypothetical ...    26   7.8  
AF040660-7|AAN65287.1|  366|Caenorhabditis elegans Hypothetical ...    26   7.8  
AF040660-6|AAN65286.1|  541|Caenorhabditis elegans Hypothetical ...    26   7.8  
AF040660-5|AAC71149.1|  651|Caenorhabditis elegans Hypothetical ...    26   7.8  

>Z95619-1|CAB09112.1|  156|Caenorhabditis elegans Hypothetical
           protein H21P03.1 protein.
          Length = 156

 Score =  128 bits (310), Expect = 1e-30
 Identities = 54/105 (51%), Positives = 80/105 (76%)
 Frame = +2

Query: 2   VNAARRQGIPVDTQQKYGAGTNKQHVTTKNTAKLDRETEELRHEKIPLDLGKLIMQGRQA 181
           +NAA+R G+ + T++K  +G N+QH   KNT +LD ETEEL H+K+ L LGK++ Q R  
Sbjct: 35  LNAAQRAGVDISTEKKTMSGGNRQHSANKNTLRLDEETEELHHQKVALSLGKVMQQARAT 94

Query: 182 KGMSQKDLATKICEKPQIVNDYEAGRGIPNNIVLGKIERAIGIKL 316
           KG +QKDL+T+I EKPQ+V +YE+G+ +PN  ++ K+ERA+G+KL
Sbjct: 95  KGWTQKDLSTQINEKPQVVGEYESGKAVPNQQIMAKMERALGVKL 139


>Z69718-2|CAA93536.1|  139|Caenorhabditis elegans Hypothetical
           protein W06D11.3 protein.
          Length = 139

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 62  TNKQHVTTKNTAKLDRETEELRHEKIPLDLG 154
           ++KQH+ T+N   +D E E+   EKI  + G
Sbjct: 71  SSKQHMVTENIETVDAENEQQDGEKIASNTG 101


>Z99286-1|CAH60792.1|  311|Caenorhabditis elegans Hypothetical
           protein Y7A9C.7 protein.
          Length = 311

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = -3

Query: 373 IPLFLSARRLQWLASXFSXKFYSNCPFNFSKNNVIWNATTSFII--IYNLWFFTNFSGEV 200
           IP++LS ++L +LAS       SN P  F    +IW   T  I    Y   F     GE+
Sbjct: 198 IPIYLSVKKLSYLASA-----KSNTPQRF----IIWQTATVVIFKCTYIPTFLAFLLGEL 248

Query: 199 FLTH--SFSLSALHYKFPQI 146
            L +   FSLS   +  P I
Sbjct: 249 SLLYLVLFSLSIDFFTTPLI 268


>Z82259-5|CAB05125.2|  353|Caenorhabditis elegans Hypothetical
           protein C28D4.5 protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 316 KFYSNCPFNFSKNNV-IWNATTSFIIIYNLW 227
           K Y N  FNF +N++ IW    SF   Y+LW
Sbjct: 59  KVYGNQRFNFKRNDIDIWR--KSFKDSYSLW 87


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 17   RQGIPVDTQQKYGAGTNKQHVT-TKN 91
            +Q IP  +QQ+Y +G  + H T TKN
Sbjct: 2983 QQQIPAQSQQQYNSGRPQMHTTPTKN 3008


>Z81547-4|CAB04458.1|  368|Caenorhabditis elegans Hypothetical
           protein F53F8.5 protein.
          Length = 368

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +2

Query: 17  RQGIPVDTQQKYGAGTNKQHVTTKNTAKLDRET-EELRHEKIPLDLGKLIMQGRQAKGMS 193
           R GIP +  +KY        +T +   +LD+ T  EL    I  D   ++ + + AK   
Sbjct: 10  RAGIPSEIAKKYAKSFATNRITKEMLPELDKSTLSELGVSAIG-DQLCILRRIKAAKSAI 68

Query: 194 QKDLATKICEKPQ 232
           +++    I E+PQ
Sbjct: 69  EREAEEAIQEEPQ 81


>U88314-11|AAP68950.1|  241|Caenorhabditis elegans Hypothetical
           protein C46H11.10b protein.
          Length = 241

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 110 ETEELRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEKPQIVNDYEAG 256
           + EELR   +PLDL +LI            D   K+    +I+N+++ G
Sbjct: 124 QLEELRMYGVPLDLDQLIESNISEVAADTIDKDIKLKHVRKIINNWKNG 172


>U88314-10|AAP68949.1|  344|Caenorhabditis elegans Hypothetical
           protein C46H11.10a protein.
          Length = 344

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 110 ETEELRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEKPQIVNDYEAG 256
           + EELR   +PLDL +LI            D   K+    +I+N+++ G
Sbjct: 227 QLEELRMYGVPLDLDQLIESNISEVAADTIDKDIKLKHVRKIINNWKNG 275


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
           protein Y11D7A.14 protein.
          Length = 1464

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +2

Query: 158 LIMQGR-QAKGMSQKDLATKICEKPQIVND-YEAGR 259
           L+M+ + Q+KG S+K+  T IC+  Q+  + Y  G+
Sbjct: 706 LLMKNKEQSKGASEKEKCTLICQDAQVRKERYAVGK 741


>AF067609-5|AAC17534.1|  644|Caenorhabditis elegans Hypothetical
           protein C23H5.7 protein.
          Length = 644

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 337 LASXFSXKFYSNCPFNFSKNNVIWNATTSFIIIYNLWFFTNF 212
           L   F    Y   PFN SK   IW+   SF ++YN++    F
Sbjct: 29  LHDSFHRLLYFYVPFN-SKYYYIWSFFVSFGVMYNMFAMVIF 69


>AF038608-4|AAU05594.2|  310|Caenorhabditis elegans Serpentine
           receptor, class z protein37 protein.
          Length = 310

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
 Frame = -3

Query: 373 IPLFLSARRLQWLASXFSXKFYSNCPFNFSKNNVIWNATTSFIIIYNLWFFTNFSGEVFL 194
           IP+F+S R+L  L    S +F+S  P  +    + W +    ++++ + F   F   ++ 
Sbjct: 197 IPIFISVRKLSQLT---SAQFHS--PHIY----IFWQSIV--VVVFKIHFIKEFISYLYF 245

Query: 193 TH----SFSLSALHY 161
            +    SF +S LHY
Sbjct: 246 DYVYCFSFIISTLHY 260


>AF040660-8|AAN65288.1|  594|Caenorhabditis elegans Hypothetical
           protein W05G11.6d protein.
          Length = 594

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 116 EELRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEK-PQIVNDYEAGRGIPNNIVLGKI 292
           E+L+H +I   LG+    G + K        T   ++ P I  D+EA +G+P + ++   
Sbjct: 404 EQLKHLEITNWLGERWHIGDEGKAAHPNSRFTAPAKQCPNIHPDWEAPQGVPIDAIVFGG 463

Query: 293 ERAIGIKL 316
            R  G+ L
Sbjct: 464 RRPEGVPL 471


>AF040660-7|AAN65287.1|  366|Caenorhabditis elegans Hypothetical
           protein W05G11.6c protein.
          Length = 366

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 116 EELRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEK-PQIVNDYEAGRGIPNNIVLGKI 292
           E+L+H +I   LG+    G + K        T   ++ P I  D+EA +G+P + ++   
Sbjct: 119 EQLKHLEITNWLGERWHIGDEGKAAHPNSRFTAPAKQCPNIHPDWEAPQGVPIDAIVFGG 178

Query: 293 ERAIGIKL 316
            R  G+ L
Sbjct: 179 RRPEGVPL 186


>AF040660-6|AAN65286.1|  541|Caenorhabditis elegans Hypothetical
           protein W05G11.6b protein.
          Length = 541

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 116 EELRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEK-PQIVNDYEAGRGIPNNIVLGKI 292
           E+L+H +I   LG+    G + K        T   ++ P I  D+EA +G+P + ++   
Sbjct: 294 EQLKHLEITNWLGERWHIGDEGKAAHPNSRFTAPAKQCPNIHPDWEAPQGVPIDAIVFGG 353

Query: 293 ERAIGIKL 316
            R  G+ L
Sbjct: 354 RRPEGVPL 361


>AF040660-5|AAC71149.1|  651|Caenorhabditis elegans Hypothetical
           protein W05G11.6a protein.
          Length = 651

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 116 EELRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEK-PQIVNDYEAGRGIPNNIVLGKI 292
           E+L+H +I   LG+    G + K        T   ++ P I  D+EA +G+P + ++   
Sbjct: 404 EQLKHLEITNWLGERWHIGDEGKAAHPNSRFTAPAKQCPNIHPDWEAPQGVPIDAIVFGG 463

Query: 293 ERAIGIKL 316
            R  G+ L
Sbjct: 464 RRPEGVPL 471


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,099,197
Number of Sequences: 27780
Number of extensions: 149871
Number of successful extensions: 433
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)