Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d08f
         (378 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   2.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   2.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   2.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   8.4  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    20   8.4  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    20   8.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   8.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    20   8.4  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 375 EFRYFCPPG 349
           ++RYFCP G
Sbjct: 281 DYRYFCPDG 289


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 375 EFRYFCPPG 349
           ++RYFCP G
Sbjct: 281 DYRYFCPDG 289


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 375 EFRYFCPPG 349
           ++RYFCP G
Sbjct: 281 DYRYFCPDG 289


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 250 FIIIYNLWF 224
           F+IIY+ WF
Sbjct: 230 FLIIYSYWF 238


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = -2

Query: 257 DQLHNHLQSV 228
           D +HNH+Q++
Sbjct: 53  DNVHNHIQNI 62


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = -2

Query: 257 DQLHNHLQSV 228
           D +HNH+Q++
Sbjct: 36  DNVHNHIQNI 45


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +2

Query: 176 QAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNIVLGKIERAIGIKL 316
           Q  G S +  A K  +K QIV   +    +    ++G+ +    +KL
Sbjct: 385 QIAGDSSRSFALKQMKKAQIVETRQQQHIMSEKRIMGEADCDFVVKL 431


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 250 FIIIYNLWF 224
           F+IIY+ WF
Sbjct: 106 FLIIYSYWF 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,549
Number of Sequences: 438
Number of extensions: 2116
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)