Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d08f
         (378 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42680.1 68415.m05283 ethylene-responsive transcriptional coa...   111   1e-25
At3g58680.1 68416.m06540 ethylene-responsive transcriptional coa...   111   2e-25
At3g24500.1 68416.m03073 ethylene-responsive transcriptional coa...    93   7e-20
At2g21890.1 68415.m02601 mannitol dehydrogenase, putative simila...    30   0.59 
At5g11530.1 68418.m01345 embryonic flower 1 (EMF1) identical to ...    27   3.1  
At2g21730.1 68415.m02585 mannitol dehydrogenase, putative simila...    27   4.1  
At1g67220.1 68414.m07651 zinc finger protein-related similar to ...    27   4.1  
At3g51560.1 68416.m05646 disease resistance protein (TIR-NBS-LRR...    26   9.6  

>At2g42680.1 68415.m05283 ethylene-responsive transcriptional
           coactivator, putative similar to ethylene-responsive
           transcriptional coactivator [Lycopersicon esculentum]
           gi|5669634|gb|AAD46402
          Length = 142

 Score =  111 bits (267), Expect = 1e-25
 Identities = 54/107 (50%), Positives = 73/107 (68%), Gaps = 2/107 (1%)
 Frame = +2

Query: 2   VNAARRQGIPVDTQQKYGAGTNK--QHVTTKNTAKLDRETEELRHEKIPLDLGKLIMQGR 175
           VNAARR G  ++T +K+ AGTNK     T+ NT  LD +TE L HE++P +L K IMQ R
Sbjct: 32  VNAARRSGADIETVRKFNAGTNKAASSGTSLNTKMLDDDTENLTHERVPTELKKAIMQAR 91

Query: 176 QAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNIVLGKIERAIGIKL 316
             K ++Q  LA  I EKPQ++ +YE+G+ IPN  +L K+ERA+G KL
Sbjct: 92  TDKKLTQSQLAQIINEKPQVIQEYESGKAIPNQQILSKLERALGAKL 138


>At3g58680.1 68416.m06540 ethylene-responsive transcriptional
           coactivator, putative similar to ethylene-responsive
           transcriptional coactivator [Lycopersicon esculentum]
           gi|5669634|gb|AAD46402
          Length = 142

 Score =  111 bits (266), Expect = 2e-25
 Identities = 53/107 (49%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
 Frame = +2

Query: 2   VNAARRQGIPVDTQQKYGAGTNK--QHVTTKNTAKLDRETEELRHEKIPLDLGKLIMQGR 175
           VNAARR G  ++T +K+ AG+NK     T+ NT KLD +TE L H+++P +L K IMQ R
Sbjct: 32  VNAARRSGADIETVRKFNAGSNKAASSGTSLNTKKLDDDTENLSHDRVPTELKKAIMQAR 91

Query: 176 QAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNIVLGKIERAIGIKL 316
             K ++Q  LA  I EKPQ++ +YE+G+ IPN  +L K+ERA+G KL
Sbjct: 92  GEKKLTQSQLAHLINEKPQVIQEYESGKAIPNQQILSKLERALGAKL 138


>At3g24500.1 68416.m03073 ethylene-responsive transcriptional
           coactivator, putative similar to ethylene-responsive
           transcriptional coactivator [Lycopersicon esculentum]
           gi|5669634|gb|AAD46402
          Length = 148

 Score = 92.7 bits (220), Expect = 7e-20
 Identities = 46/109 (42%), Positives = 70/109 (64%), Gaps = 4/109 (3%)
 Frame = +2

Query: 2   VNAARRQGIPVDTQQKYGAGTNKQHVTTK----NTAKLDRETEELRHEKIPLDLGKLIMQ 169
           VNAA R G+ V T +K+ AG+NK+  +T     NT KL+ ETE    +++  ++  +I +
Sbjct: 34  VNAALRNGVAVQTVKKFDAGSNKKGKSTAVPVINTKKLEEETEPAAMDRVKAEVRLMIQK 93

Query: 170 GRQAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNIVLGKIERAIGIKL 316
            R  K MSQ DLA +I E+ Q+V +YE G+ +PN  VL K+E+ +G+KL
Sbjct: 94  ARLEKKMSQADLAKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKL 142


>At2g21890.1 68415.m02601 mannitol dehydrogenase, putative similar
           to ELI3-2 (SP|Q02972), sinapyl alcohol dehydrogenase
           (Populus tremuloides) (gi:14279694); contains Pfam
           zinc-binding dehydrogenase domain PF00107
          Length = 375

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 140 PLDLGKLIMQGRQAKGMSQKDLATKICEKPQIVNDYE 250
           PL LG+ ++ G Q  GM +     + C K +IV+D E
Sbjct: 285 PLVLGRKMVGGSQIGGMKETQEMLEFCAKHKIVSDIE 321


>At5g11530.1 68418.m01345 embryonic flower 1 (EMF1) identical to
           embryonic flower 1 [Arabidopsis thaliana] GI:15430697
          Length = 1096

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 16/66 (24%), Positives = 35/66 (53%)
 Frame = +2

Query: 5   NAARRQGIPVDTQQKYGAGTNKQHVTTKNTAKLDRETEELRHEKIPLDLGKLIMQGRQAK 184
           + A R+G  V  Q+ +GA  ++ H   + T      TEE  ++ IP+++ +L+ + +  +
Sbjct: 572 SGADRKGKTVMVQEHHGAPRSQSHDRKETT------TEEQNNDDIPMEIVELMAKNQYER 625

Query: 185 GMSQKD 202
            +  K+
Sbjct: 626 CLPDKE 631


>At2g21730.1 68415.m02585 mannitol dehydrogenase, putative similar
           to ELI3-2 (SP|Q02972), sinapyl alcohol dehydrogenase
           (Populus tremuloides) (gi:14279694); contains Pfam
           zinc-binding dehydrogenase domain PF00107
          Length = 376

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 143 LDLGKLIMQGRQAKGMSQKDLATKICEKPQIVNDYE 250
           L LG+ ++ G Q  GM +     + C K +IV+D E
Sbjct: 287 LVLGRKMVGGSQIGGMKETQEMLEFCAKHKIVSDIE 322


>At1g67220.1 68414.m07651 zinc finger protein-related similar to
           SP|Q09472 E1A-associated protein p300 {Homo sapiens},
           SP|Q92793 CREB-binding protein {Homo sapiens}; contains
           Pfam profiles PF00569: Zinc finger ZZ type, PF00628:
           PHD-finger, PF02135: TAZ zinc finger
          Length = 1357

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +2

Query: 2   VNAARRQGIPVDTQQ--KYGAGTNKQHVTTKNTAKLDRETEELRHEK 136
           +N  ++ G  VD  +  K   GT K  VTT N  K+  E   L HEK
Sbjct: 372 LNHEKKLGTVVDIVEPMKCDEGT-KCEVTTTNKGKIHTEERSLNHEK 417



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 2   VNAARRQGIPVDTQQ--KYGAGTNKQHVTTKNTAKLDRETEELRHEK 136
           +N  ++ GI VD  +  K   GT K  VTT N  K+  E   L +EK
Sbjct: 454 LNHEKKLGIGVDIVEPMKCDEGT-KCEVTTTNKGKIQTEERSLNYEK 499


>At3g51560.1 68416.m05646 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1253

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 10/78 (12%)
 Frame = +2

Query: 20   QGIPVDTQQKYGAGTNKQHVTT--KNTAKLD----RETEELRHEKIPLDLGKL----IMQ 169
            QGIP + ++ Y AGT  Q VT+  K+ ++L     +  + L+H  +P+++  L     ++
Sbjct: 798  QGIPRNLEELYLAGTAIQEVTSLIKHLSELVVLDLQNCKRLQH--LPMEISNLKSLVTLK 855

Query: 170  GRQAKGMSQKDLATKICE 223
                 GMS ++++T I +
Sbjct: 856  LTDPSGMSIREVSTSIIQ 873


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,618,997
Number of Sequences: 28952
Number of extensions: 137123
Number of successful extensions: 390
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)