Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d07r
         (783 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)               33   0.20 
SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019)                 31   1.4  
SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7)                     30   2.4  
SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)                 30   2.4  
SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_7144| Best HMM Match : DUF834 (HMM E-Value=2.8)                     29   5.6  
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)                       29   5.6  
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.4  
SB_963| Best HMM Match : CUB (HMM E-Value=1.8e-19)                     28   7.4  

>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
          Length = 690

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 21/71 (29%), Positives = 38/71 (53%)
 Frame = -3

Query: 598 NAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTDFAFFKEDSL 419
           N  V ++  PK  ++  P S+ D WM+ +E   FV+K+N  Q+ +  SS    F K+  +
Sbjct: 248 NESVLVWRAPKSSQDALPVSITDRWMSQHE---FVEKLNM-QAVLCASSHTDEFVKDFLI 303

Query: 418 PMAEIYKLLDQ 386
            + +I  L+ +
Sbjct: 304 TLEKIPVLIHE 314


>SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019)
          Length = 736

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
 Frame = -3

Query: 511 ELDWFVQKVNPGQSQIT---RSSTDFAFFKEDSLPMA--EIYKL-LDQGKIPTDMFNSSD 350
           E  WF Q +N  +S  +   R +T F     D +P+   +I  + +D+ +IPTD++ SS 
Sbjct: 404 EGQWFRQLINESESITSLCERINTFFCSLTSDFVPLTTDDILGIPVDESEIPTDLYVSSR 463

Query: 349 ----TMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVV 227
                + S  +   G  DG P  + +  + +E  P  +E + +++
Sbjct: 464 EAGIALQSIKLRKAGGPDGIP-NIILKTFSFELAPVIAEIYNALL 507


>SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -3

Query: 358 SSDTMPSRLMLPKGTYDGFPFQLFV--FVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPV 185
           +++T P+ +++P GT       ++    + PY P P +  P  S        GYP   P 
Sbjct: 93  NTETSPNAVIIPPGTDPQLANLVYPPPSMAPYPPGPNQGTPPPSTQQQPGSGGYPMMYPQ 152

Query: 184 LPQYF 170
            P Y+
Sbjct: 153 QPGYY 157


>SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7)
          Length = 359

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
 Frame = -3

Query: 511 ELDWFVQKVNPGQSQIT---RSSTDFAFFKEDSLPMA--EIYKL-LDQGKIPTDMFNSSD 350
           E  WF Q +N  +S  +   R +T F     D +P+   +I  + +D+ +IPTD++ SS 
Sbjct: 255 EGQWFRQLINESESITSLCERINTFFCSLTSDFVPLTTDDILGIPVDESEIPTDLYVSSR 314

Query: 349 ----TMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKS 233
                + S  +   G  DG P  + +  + +E  P  +E + +
Sbjct: 315 EAGIALQSIKLRKAGGPDGIP-NIILKTFSFELAPVIAEIYNA 356


>SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)
          Length = 867

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
 Frame = -3

Query: 511 ELDWFVQKVNPGQSQIT---RSSTDFAFFKEDSLPMA--EIYKL-LDQGKIPTDMFNSSD 350
           E  WF Q +N  +S  +   R +T F     D +P+   +I  + +D+ +IPTD++ SS 
Sbjct: 490 EGQWFRQLINESESITSLCERINTFFCSLTSDFVPLTTDDILGIPVDESEIPTDLYVSSR 549

Query: 349 ----TMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKS 233
                + S  +   G  DG P  + +  + +E  P  +E + +
Sbjct: 550 EAGIALQSIKLRKAGGPDGIP-NIILKTFSFELAPVIAEIYNA 591


>SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -3

Query: 343 PSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYP 200
           PS ++ P+  Y G+PFQ     YP  P P     F  + P + P  YP
Sbjct: 169 PSPVLSPQ-VYRGYPFQ-----YPGTPPPPMYPAFPPIFPSSPPPEYP 210


>SB_7144| Best HMM Match : DUF834 (HMM E-Value=2.8)
          Length = 497

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
 Frame = -3

Query: 763 QNGHXLDHFDFDAFNTVYFS-KEELKSSPHGYKVRQPRLNHKPFTVTIDIKSDVATNAVV 587
           ++G  LD  DFD    +Y + ++E+ +      V   R+N  P      IK  + T +  
Sbjct: 195 ESGPSLD--DFDREIEIYMTARDEIYALQDWCDVGWMRVNMAP------IKQVLGTYSSK 246

Query: 586 KMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTDFAFF 434
            MF+  KY  +    +L D       LD F++++ PG   IT +  D A F
Sbjct: 247 WMFVYTKYLSDQVSSTLND-------LDSFLKRIEPGIEAITGNERDIASF 290


>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
          Length = 644

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/69 (26%), Positives = 38/69 (55%)
 Frame = -1

Query: 228 FRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIR 49
           + T +  V+++++  + + S N    S +  +T+ +NYS +   +LT   + +NY+ L  
Sbjct: 76  YLTLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTLSKNYLT---LSKNYSTL-- 130

Query: 48  KSKRTLTIT 22
            SK  LT++
Sbjct: 131 -SKNYLTLS 138



 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/54 (22%), Positives = 34/54 (62%)
 Frame = -1

Query: 228 FRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRN 67
           + T +  ++++++  +L+ S  L  +  ++ ST+++NYS +   +LT+ +I ++
Sbjct: 155 YLTLSIKLLNTLSKNYLTLSIKLLNTLSKNSSTLRKNYSTLSRNYLTLRRIPQH 208


>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1894

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 274 PYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQYFKQPNMFFKKV 140
           P+ P  +  +PF+SV P  +PF          Q  +QP+  F+ V
Sbjct: 509 PFRPGQQPQQPFRSVQPPQQPFRADQQTQQPFQSGQQPHQPFRSV 553


>SB_963| Best HMM Match : CUB (HMM E-Value=1.8e-19)
          Length = 507

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
 Frame = -1

Query: 753 TXLTISTSMPSTLSTSVKKNSRALLTVT----RSVNHVLTTSRSL*QSILNLMLPLTPSS 586
           T +  +T +P+TL ++ + +S    TVT     SV HV+TT+    Q   +L   + P++
Sbjct: 121 TSVLPTTDIPTTLISTTQLSSHNATTVTPTQATSVTHVITTNHVTRQP--HLRSTMAPNN 178

Query: 585 RCSLDLNTMRTAFPSA 538
              L+  T +   P+A
Sbjct: 179 TADLN-TTAQVIMPAA 193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,062,299
Number of Sequences: 59808
Number of extensions: 443922
Number of successful extensions: 1220
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)