Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d07r
         (783 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF186379-1|AAD56250.1|  798|Homo sapiens ligand effect modulator...    31   3.5  
AF159714-1|AAD51615.1|  798|Homo sapiens PPAR gamma coactivator-...    31   3.5  
AF108205-1|AAF19083.1|  798|Homo sapiens PPAR gamma coactivator-...    31   3.5  
AF106698-1|AAF18573.1|  798|Homo sapiens PPAR gamma coactivator-...    31   3.5  
AC092834-1|AAY41058.1|  798|Homo sapiens unknown protein.              31   3.5  
AB061325-1|BAE46508.1|  271|Homo sapiens PPAR gamma coactivator ...    31   3.5  
AB046775-1|BAB13381.2| 2414|Homo sapiens KIAA1555 protein protein.     31   6.2  

>AF186379-1|AAD56250.1|  798|Homo sapiens ligand effect modulator-6
           protein.
          Length = 798

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = -1

Query: 777 RRQSDKMVTXLTISTSMPSTLSTSVKKNSRALLTVTRSVNHVLTTSRSL*QSILNLMLPL 598
           RR   +++  LT +   P T  T  + +SR   T ++  +H  + S+ L      L LPL
Sbjct: 204 RRPCSELLKYLTTNDDPPHTKPTENRNSSRDKCT-SKKKSHTQSQSQHLQAKPTTLSLPL 262

Query: 597 TPSS 586
           TP S
Sbjct: 263 TPES 266


>AF159714-1|AAD51615.1|  798|Homo sapiens PPAR gamma coactivator-1
           protein.
          Length = 798

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = -1

Query: 777 RRQSDKMVTXLTISTSMPSTLSTSVKKNSRALLTVTRSVNHVLTTSRSL*QSILNLMLPL 598
           RR   +++  LT +   P T  T  + +SR   T ++  +H  + S+ L      L LPL
Sbjct: 204 RRPCSELLKYLTTNDDPPHTKPTENRNSSRDKCT-SKKKSHTQSQSQHLQAKPTTLSLPL 262

Query: 597 TPSS 586
           TP S
Sbjct: 263 TPES 266


>AF108205-1|AAF19083.1|  798|Homo sapiens PPAR gamma coactivator-1
           protein.
          Length = 798

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = -1

Query: 777 RRQSDKMVTXLTISTSMPSTLSTSVKKNSRALLTVTRSVNHVLTTSRSL*QSILNLMLPL 598
           RR   +++  LT +   P T  T  + +SR   T ++  +H  + S+ L      L LPL
Sbjct: 204 RRPCSELLKYLTTNDDPPHTKPTENRNSSRDKCT-SKKKSHTQSQSQHLQAKPTTLSLPL 262

Query: 597 TPSS 586
           TP S
Sbjct: 263 TPES 266


>AF106698-1|AAF18573.1|  798|Homo sapiens PPAR gamma coactivator-1
           protein.
          Length = 798

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = -1

Query: 777 RRQSDKMVTXLTISTSMPSTLSTSVKKNSRALLTVTRSVNHVLTTSRSL*QSILNLMLPL 598
           RR   +++  LT +   P T  T  + +SR   T ++  +H  + S+ L      L LPL
Sbjct: 204 RRPCSELLKYLTTNDDPPHTKPTENRNSSRDKCT-SKKKSHTQSQSQHLQAKPTTLSLPL 262

Query: 597 TPSS 586
           TP S
Sbjct: 263 TPES 266


>AC092834-1|AAY41058.1|  798|Homo sapiens unknown protein.
          Length = 798

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = -1

Query: 777 RRQSDKMVTXLTISTSMPSTLSTSVKKNSRALLTVTRSVNHVLTTSRSL*QSILNLMLPL 598
           RR   +++  LT +   P T  T  + +SR   T ++  +H  + S+ L      L LPL
Sbjct: 204 RRPCSELLKYLTTNDDPPHTKPTENRNSSRDKCT-SKKKSHTQSQSQHLQAKPTTLSLPL 262

Query: 597 TPSS 586
           TP S
Sbjct: 263 TPES 266


>AB061325-1|BAE46508.1|  271|Homo sapiens PPAR gamma coactivator
           variant form protein.
          Length = 271

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = -1

Query: 777 RRQSDKMVTXLTISTSMPSTLSTSVKKNSRALLTVTRSVNHVLTTSRSL*QSILNLMLPL 598
           RR   +++  LT +   P T  T  + +SR   T ++  +H  + S+ L      L LPL
Sbjct: 204 RRPCSELLKYLTTNDDPPHTKPTENRNSSRDKCT-SKKKSHTQSQSQHLQAKPTTLSLPL 262

Query: 597 TPSS 586
           TP S
Sbjct: 263 TPES 266


>AB046775-1|BAB13381.2| 2414|Homo sapiens KIAA1555 protein protein.
          Length = 2414

 Score = 30.7 bits (66), Expect = 6.2
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
 Frame = -3

Query: 301  PFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVL-PQYFKQPNMFFKKVLVY-- 131
            P  LF F +  +  P +S  F S    +     P+  P+L P  F+ P +  +  +++  
Sbjct: 1151 PVSLFSFQHLVQHEPGQSPEFFSTQAMSSLLSSPYSMPLLPPSLFQAPPLPLQPTVLHPG 1210

Query: 130  --HEGELFPYLFNIPHYTP 80
              H  +L P+  NIP   P
Sbjct: 1211 QLHLPQLMPHPANIPFRQP 1229


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,995,965
Number of Sequences: 237096
Number of extensions: 2147887
Number of successful extensions: 4556
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4556
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9534535578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)