Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d07r
         (783 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    33   0.23 
U00063-5|AAK18963.1|  182|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U41016-8|ABC71806.1|  212|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z68213-1|CAA92435.2|  487|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z81099-2|CAB03188.2|  297|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AF024500-4|AAB70365.1|  335|Caenorhabditis elegans Hypothetical ...    28   8.7  

>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -3

Query: 268 EPTPK-ESEPFKSVVPDNKPFGYPFDRPV-LPQYFKQPNMFFKKVLVYHEGELFPYLFNI 95
           +PTPK +SEPF   +P +KP   PF  P+  P+   +P     K +  H+ + FP     
Sbjct: 7   KPTPKPKSEPFPKPMPKSKPKSEPFPSPMPFPKPMPKPKP-KPKPMPKHKPKPFPKPMLF 65

Query: 94  PHYTP 80
           P   P
Sbjct: 66  PKPMP 70



 Score = 31.5 bits (68), Expect = 0.70
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = -3

Query: 283 FVYPYEPTPKESEPFKSVVPDNKPFGYPFDRP-VLPQYFKQP---NMFFKKVLVYHEGEL 116
           F  P   +  +SEPF S +P  KP   P  +P  +P++  +P    M F K +  H+ + 
Sbjct: 17  FPKPMPKSKPKSEPFPSPMPFPKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPKHKPKP 76

Query: 115 FPYLFNIPHYTP 80
           FP     P   P
Sbjct: 77  FPKPMLFPKPMP 88


>U00063-5|AAK18963.1|  182|Caenorhabditis elegans Hypothetical
           protein F56C9.8 protein.
          Length = 182

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -3

Query: 277 YPYEPTPKESEPFKSVV--PDNKPFGYPFDRPVLPQYFKQPNMFFKKVLVYHEGELFPYL 104
           +PY P P ++  + + +  P N     P   P + QY  QP  +    LV    + +   
Sbjct: 82  FPYNPAPTQNYDYNAPIRTPVNPTSFTPV--PSVTQYSTQPQQYSNVPLVTPTTQQYIQN 139

Query: 103 FNIPHYTPD 77
            +IP Y PD
Sbjct: 140 QSIPQYAPD 148


>U41016-8|ABC71806.1|  212|Caenorhabditis elegans Hypothetical
           protein R11G1.2 protein.
          Length = 212

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -3

Query: 334 LMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQ-YFKQPN 158
           L++    Y G   +     Y    T  +S+ F   VP  KP GY  D P+ P+ Y     
Sbjct: 91  LLMDSDEYCGLSIENVYTRYITSETIDQSDTFGYNVP--KPIGYKGDEPIWPRSYGYSAE 148

Query: 157 MFF 149
           MFF
Sbjct: 149 MFF 151


>Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical
           protein F38A6.2 protein.
          Length = 891

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +2

Query: 584 LDDGVSGNIRFNIDCHSERLVVKTWLTDLVT---VRRALEFFFTEVDSVEGIEVEMVKXV 754
           L +G  GN+ F + C S +L+  +    L     + + +EF    +DSVE ++V++    
Sbjct: 623 LIEGDPGNLTFLLTCSSNQLITSSQCGTLRIWNHIDKKVEFSKKFIDSVECVDVDVTNTH 682

Query: 755 TIL 763
            IL
Sbjct: 683 IIL 685


>Z68213-1|CAA92435.2|  487|Caenorhabditis elegans Hypothetical
           protein C01F6.2 protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 262 TPKESEPFKSVVPDNKPFGYPFDRPVLPQ 176
           TPK  +  +  VP N+P    F RPV+P+
Sbjct: 128 TPKTPDVIRQKVPMNEPVNCVFIRPVIPK 156


>Z81099-2|CAB03188.2|  297|Caenorhabditis elegans Hypothetical
           protein K08F9.3 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
 Frame = -3

Query: 391 DQGKIPTDMFNSSDTMPSRLMLPKGTYDGFPFQLFVFVYP-YEPTPKESEPFKSVVPDNK 215
           D   I  D+F+  D+ P    +P   Y+   F  +    P Y P P   +P     P   
Sbjct: 8   DPDSISPDVFDPYDSTP---YVPDA-YNPDMFNPYNNTVPDYIPVPSRPDPQSIYFPT-- 61

Query: 214 PFGYPFDRPVLPQYFKQPNMFFKKVLVYHEGELFPYLFNIPHYTPDK 74
             G    RP    Y K   +    VL++  G+LF ++ N+   TPD+
Sbjct: 62  VIGNANRRPFAGLYVKI--LLGCLVLLFFFGDLFYFILNVKVTTPDQ 106


>AF024500-4|AAB70365.1|  335|Caenorhabditis elegans Hypothetical
           protein K06H6.6 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 136 VYHEGELFPYLFNIPHYTPDK 74
           VY  G L PY + +PH+TP K
Sbjct: 302 VYRNGGLNPYDYYLPHWTPLK 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,281,010
Number of Sequences: 27780
Number of extensions: 343137
Number of successful extensions: 1035
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)