Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d07f
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    26   4.7  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    25   6.2  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    25   6.2  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    25   8.2  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    25   8.2  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   8.2  

>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -3

Query: 293 GKESDLVHHHEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIADLVNVVE-KRQNLLLLFDE 117
           G  S  +HHH++ +  H  +  L G   EV G    L++ +D + +      N++ ++D 
Sbjct: 279 GSRSGAIHHHDVRIANHQ-IGTLQGHSSEVCG----LAWRSDGLQLASGGNDNVVQIWDA 333

Query: 116 RS 111
           RS
Sbjct: 334 RS 335


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 185 VLQSRPGLQHRGQQGLLHKHESLRKFHDDVQGRIPSQEFGILDLLRKN 328
           + Q+  GL++   +G++H+         D +G+I   +FGI   L  N
Sbjct: 503 IKQTLKGLEYLHSRGIVHRDIKGANILVDNKGKIKISDFGISKKLELN 550


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = -3

Query: 437 EHSLVHVDSGVACCFVETFKIFGIIEQLEQRDGFFPHFFVKDREFQILGKESDLVHHH 264
           ++ +++VD  +A CFV+  +  G    LE+ + +  +  + +  F +LG+   L+ HH
Sbjct: 539 DNLILNVDGCIAVCFVDLLRNCGAF-TLEEANEYI-NLGILNGMF-VLGRSIGLIGHH 593


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = +3

Query: 417 YMNQGMFLYAYYIAIIQRSDTASFVLPAPYEAYPQYFVNMEVKNKMDYVKMMDG 578
           YM +    YA+ I + + S+T   + P+  E    +   +   N ++++   DG
Sbjct: 213 YMKENNKAYAFTITVTEYSETIPSLWPSTKEFIKMHPNALHPNNALNFISNDDG 266


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 281 DLVHH-HEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIADLVNVVEKRQNLLLLF 123
           DL HH +  F GF VC+  ++  + + + D + L    + +NVV    N++ +F
Sbjct: 243 DLEHHDYRSFRGF-VCLMQISNREKDWIVDTLELREELEALNVVFTNPNIIKVF 295


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
 Frame = -3

Query: 371  GIIEQLEQRDGFFPHFFVKD---REFQILGKESDLVHHHEIFVGFHVCVAVLA-GLDVEV 204
            G  + +E        F++K+   +E Q   K  D +HH EI++  H+    +A  L +  
Sbjct: 1029 GFKKSIEDSYTMKKRFWIKEYFLKEVQASWKTDDNLHHGEIYLRNHILSDEMANNLSILP 1088

Query: 203  LGDFVVLSFIADLVNVVEKRQ--NLLLLFDERSLNRCRFEFRYGATESEGN 57
            +     +S+ ++ V  V  R+   L+L F   +    R++  +    ++ N
Sbjct: 1089 IRIQAWVSYDSEKVTTVCPREPFKLVLEFFGHADTNMRYKISWTQLNTQAN 1139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,310,243
Number of Sequences: 5004
Number of extensions: 45494
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)