Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d06r
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    67   3e-12
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.2  
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    27   2.9  
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.9  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    26   5.1  
SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual    26   6.7  

>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 62/219 (28%), Positives = 89/219 (40%), Gaps = 26/219 (11%)
 Frame = -2

Query: 701 PRVSQYRLAAHLSXXXXXXXXXXXXXXXXL------RPFPAAATLQ------KIKELKSI 558
           PRVS YRLA HL+                L      +   + +T Q       ++++K  
Sbjct: 246 PRVSHYRLATHLAAAVALYIGLVWTGHGILQRHAFLKSMKSGSTSQLTSMVSSVQKMKGF 305

Query: 557 TGLAHAVKAMTFITAVSGAFVAGLDAGLVYNSFPKMGDNWL-PDDILAFSPTI------- 402
               ++   +  IT +SGAFVAGLDAG++Y +FP+MG+  L P     F           
Sbjct: 306 RTSVNSFVGLVLITLLSGAFVAGLDAGMIYCTFPEMGEGRLAPSKSELFDQRFCRKDDKS 365

Query: 401 ----KNFTENPTTVQFDHRVLG--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
               +N  +NP+ VQ +HR+L                                       
Sbjct: 366 DLIWRNMIDNPSLVQLEHRILAITTFVAACGLFIFSRAKRNILPKKIKTSINVVTGVVTA 425

Query: 239 XXXLGVATLLCYVPTALAASHQAGSLVLLSLAVWLTHEV 123
              LG+ TL+  VP  LAA HQAGSLV L+ A+ L   +
Sbjct: 426 QATLGIMTLIYVVPVPLAALHQAGSLVTLTAALSLAQRL 464


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 46   TDSIKKSIELFSASPPYYLGMYLSSLTSCVSHTASD-SSTSEPAWWLAASAVGT*HSSVA 222
            TDS   S      S         +S+T   S +AS  SS+SE     AASA G+  SS+A
Sbjct: 920  TDSATSSSWTAETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIA 979

Query: 223  TPS 231
            T S
Sbjct: 980  TAS 982


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 636 TWRSPEGAPPLPGGGYF 586
           TW++P GA P+P  G F
Sbjct: 181 TWKNPTGAEPVPDTGLF 197


>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 524 FITAVSGAFVAGLDAGLVYNSFPKMGDNWLPDDILAFSPTIKNFT--ENPTT 375
           FI+ ++  F+        + SFP + DNW     L F+ T + F   ++P+T
Sbjct: 263 FISRLASQFLVSFQTLPSFFSFPLVTDNWQHLAALPFNSTYETFRAFDHPST 314


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +3

Query: 486 QTRHEGSGDGRDESHRLDGVREAGDALQLLDFLQSSRRR-EGAEHPQGSAK 635
           +TR       RDE H L+G+RE  +      F   SR    G  H   S++
Sbjct: 147 KTRRNDRDSRRDERHYLNGIRERRERSISPSFSHHSRTSISGQSHSSRSSR 197


>SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 582 ENQGVEEHHRPRARRQGDDFH 520
           E Q +EE HR  A ++   FH
Sbjct: 122 ETQAIEERHRKEAEQENKKFH 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,625
Number of Sequences: 5004
Number of extensions: 43910
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)