Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d06r
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1123 + 24474434-24474538,24474800-24474860,24475050-244754...   113   2e-25
07_03_1695 - 28775525-28776098,28776586-28776693,28777129-28777448     30   2.3  
04_04_0157 + 23165638-23166633                                         30   2.3  
06_03_1144 - 27980216-27980896,27981682-27982048,27983499-279836...    29   5.3  
07_01_0625 + 4674661-4674843,4676120-4676671,4676947-4677081           28   7.1  
01_01_1081 + 8504035-8504461,8504546-8504685                           28   7.1  
10_02_0186 + 6399245-6399414,6444721-6444783,6444913-6445026,644...    28   9.3  

>08_02_1123 +
           24474434-24474538,24474800-24474860,24475050-24475477,
           24475915-24476231,24476991-24477216,24477302-24477547,
           24477635-24477745,24478051-24478182,24478297-24478325,
           24478352-24478502
          Length = 601

 Score =  113 bits (271), Expect = 2e-25
 Identities = 55/117 (47%), Positives = 70/117 (59%)
 Frame = -2

Query: 701 PRVSQYRLAAHLSXXXXXXXXXXXXXXXXLRPFPAAATLQKIKELKSITGLAHAVKAMTF 522
           PRVS YRLA HL+                + P P A ++  +     I  LA  V A+  
Sbjct: 388 PRVSPYRLATHLTSAFVIYCGILWTALSVVMPEPPAGSMNWVNSAAKIKKLAIPVSAVVG 447

Query: 521 ITAVSGAFVAGLDAGLVYNSFPKMGDNWLPDDILAFSPTIKNFTENPTTVQFDHRVL 351
           ITA+SGAFVAG DAG  YN+FPKMGD W+P+D+ A  P I+NF EN +TVQ +HR+L
Sbjct: 448 ITAISGAFVAGNDAGHAYNTFPKMGDTWIPEDVFAMEPFIRNFFENTSTVQLNHRIL 504


>07_03_1695 - 28775525-28776098,28776586-28776693,28777129-28777448
          Length = 333

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = +1

Query: 301 LRDSNHSVLAAARVLAPSTRWSNCTVVGFSVKFLIVGENAKMSSGSQLSPILGKEL*TRP 480
           LR S H ++A A    PS  ++NC     S +     E A +SS   LS ++G  + T P
Sbjct: 221 LRQSRHRLMAEAVDPTPSCSFANCHSPVLSSE--CASEAAALSSSLPLSAVVGSAV-TTP 277

Query: 481 ASRPATKAP 507
           ++     AP
Sbjct: 278 STSIVGSAP 286


>04_04_0157 + 23165638-23166633
          Length = 331

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +1

Query: 481 ASRPATKAPETAVMKVIALTACARP--VMLFNSLIFCKVAAAGKGRSTLRAPPSNPAYNM 654
           ++ PAT+AP T V  +  L A   P  + L+++ +   +AA   GR  L A   +P + +
Sbjct: 32  STTPATRAPATPVAVLWDLAASRPPSTLPLYDAAVRLHLAATSFGRVRLSAAFVHPGHRL 91

Query: 655 NARLKCAAS 681
            A    AA+
Sbjct: 92  PAPSPSAAA 100


>06_03_1144 -
           27980216-27980896,27981682-27982048,27983499-27983644,
           27983872-27984111
          Length = 477

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = -1

Query: 633 WRSPEGAPPL--PGGGYFAENQGVEEH 559
           W   EG PP+   GG  FA N G+E H
Sbjct: 141 WTYREGEPPVVQKGGAAFAGNDGIEGH 167


>07_01_0625 + 4674661-4674843,4676120-4676671,4676947-4677081
          Length = 289

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +1

Query: 574 LIFCKVAAAGKGRSTLRAPPSNPA----YNMNARLKCAASL 684
           L+F  + AAGK  +T   PP  PA    Y++N  L C   L
Sbjct: 119 LLFANLTAAGKAPTTTPPPPRLPAGGALYSVNLALICLGLL 159


>01_01_1081 + 8504035-8504461,8504546-8504685
          Length = 188

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 432 GKPIVSHFGEGIVDQACVQTRHEGSGDG 515
           G P+++ FGEG+     ++  H+G G G
Sbjct: 106 GAPLLAEFGEGVDAVPSLEQGHKGDGQG 133


>10_02_0186 +
           6399245-6399414,6444721-6444783,6444913-6445026,
           6445124-6445364,6446002-6446202,6446244-6446395,
           6446539-6446689
          Length = 363

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = -2

Query: 197 TALAASHQAGSLVL----LSLAVWLTHEVKLLKYIP 102
           TA    H  G+++L    LSLAVW T + ++LK  P
Sbjct: 169 TAFGHHHIRGTILLAISCLSLAVWYTVQAQMLKVFP 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,521,170
Number of Sequences: 37544
Number of extensions: 374982
Number of successful extensions: 1390
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)