Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d06r
(762 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_9129| Best HMM Match : efhand (HMM E-Value=0.075) 31 1.0
SB_9345| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_44764| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_25665| Best HMM Match : TolA (HMM E-Value=1.7) 29 5.5
SB_18521| Best HMM Match : ig (HMM E-Value=7.5e-11) 29 5.5
SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33) 28 7.2
SB_39778| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_32940| Best HMM Match : EGF (HMM E-Value=0) 28 7.2
SB_11507| Best HMM Match : SIR2 (HMM E-Value=3.4e-11) 28 9.5
SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0) 28 9.5
>SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1246
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/72 (33%), Positives = 34/72 (47%)
Frame = -2
Query: 710 SDVPRVSQYRLAAHLSXXXXXXXXXXXXXXXXLRPFPAAATLQKIKELKSITGLAHAVKA 531
+++PRVSQYRLA+HL L P + KEL+ H+ K
Sbjct: 1174 NNIPRVSQYRLASHLGSAIVFYMGLLWCSLGQLLP---RNQYELTKELRRFRMYTHSCKG 1230
Query: 530 MTFITAVSGAFV 495
+ F+TA+SG V
Sbjct: 1231 LVFLTAISGVAV 1242
>SB_9129| Best HMM Match : efhand (HMM E-Value=0.075)
Length = 443
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +1
Query: 22 GNLSLTDDTDSIKKSIELFSASPPYYLGMYLSSLTSCVSHT 144
GN LTDD I K I+L Y +YL S TSC S++
Sbjct: 298 GNFGLTDDAPPIAKFIDLDLTYTKYTAEVYLES-TSCSSNS 337
>SB_9345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 258
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -1
Query: 741 NQDXRQVPWTFRCPEGL--AIQARRALKSGVHIVRGITWRSPEGAPPLP 601
+ D ++V + FR P GL + +R+ S H +RSP G PLP
Sbjct: 68 SSDHQEVFFLFRSPRGLFPLLVTKRSFSSSGHQEVFFLFRSPRGLCPLP 116
>SB_44764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 28.7 bits (61), Expect = 5.5
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +3
Query: 423 DVIGKPIVSHFGEGIVDQACVQTRHEGSGDGRDESHRLDGVREAGDALQLLDFLQSSRRR 602
D++GK + S + CV+ G G DE+ L+ ++E G ++D + S R
Sbjct: 201 DLLGKIVCSVSSR----ECCVEESFVGDDRGIDEASLLNALKEKG----IVDEVMRSLRF 252
Query: 603 EGAEHPQGSAK 635
EG E + AK
Sbjct: 253 EGLEREKRKAK 263
>SB_25665| Best HMM Match : TolA (HMM E-Value=1.7)
Length = 697
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +3
Query: 114 EQLDLVREPHGQRQQHQRARLVARRQ----RSGHVAQQRGHAQ 230
++LD ++ GQ+QQ Q+ RL RRQ + H+ QQ+ Q
Sbjct: 241 QRLDRHQQQQGQQQQQQQQRLQQRRQLRERQQRHLQQQQQRQQ 283
>SB_18521| Best HMM Match : ig (HMM E-Value=7.5e-11)
Length = 1033
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/38 (23%), Positives = 18/38 (47%)
Frame = -3
Query: 475 WSTIPSPKWETIGFPMTSWHSHPQSRTLPRTRLPCSST 362
W++ P +W + +W+ S + +PC+ST
Sbjct: 574 WNSFPKQEWNHPDCKLLAWYKPSSSEVWGNSSVPCAST 611
>SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)
Length = 321
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 132 REPHGQRQQHQRARLVARRQRSGHVAQQRGHAQ 230
R+P+GQ++ Q+ R +QR G Q GH Q
Sbjct: 70 RQPYGQQRYGQQQRQPYGQQRYGQQPQTYGHQQ 102
>SB_39778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +1
Query: 13 IFAGNLSLTDDTDSIKKSIELFSA----SPPYYLGMYLSSLTSCVSHTASD-SSTSEPAW 177
+F +++ +D+D + SIE+FS S P Y + S TS + SD S S+ AW
Sbjct: 30 VFNAHVTSWNDSDKLLTSIEIFSQTNNFSNPVYDTLVHPSTTSSTTALLSDMESNSDFAW 89
>SB_32940| Best HMM Match : EGF (HMM E-Value=0)
Length = 1025
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 430 MTSWHSHPQSRTLPRTRLPCSSTT 359
+T+ H HPQS +PR +LP T
Sbjct: 822 VTANHGHPQSNIVPREKLPLLEIT 845
>SB_11507| Best HMM Match : SIR2 (HMM E-Value=3.4e-11)
Length = 813
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 366 ELHGSRVLGKVLDCG*ECQDVIGKPIVSHFGEGIVDQACVQTRHEGSGDGR 518
ELHG+ + K C ++ + V+ G+ +AC QTR GS G+
Sbjct: 271 ELHGNMFVEKCDKCN---KEYVRTTAVASVGQKRSGRACTQTRQRGSCRGK 318
>SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1358
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 133 VSHTASDS-STSEPAWWLAASAVGT*HSSVATPSPA 237
+SH AS+ +E WW + ++VGT + ++ PA
Sbjct: 526 LSHNASNLVDNNESTWWQSTASVGTANITIRLTGPA 561
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,922,651
Number of Sequences: 59808
Number of extensions: 369216
Number of successful extensions: 1352
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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