Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d06r
(762 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49130-3|CAA88968.1| 395|Caenorhabditis elegans Hypothetical pr... 142 2e-34
Z99710-9|CAN99658.1| 402|Caenorhabditis elegans Hypothetical pr... 31 0.89
Z99710-8|CAB16868.1| 383|Caenorhabditis elegans Hypothetical pr... 31 0.89
EF015633-1|ABK20307.1| 383|Caenorhabditis elegans alpha 1,2-fuc... 31 0.89
L16685-1|AAA28170.3| 145|Caenorhabditis elegans Hypothetical pr... 30 1.6
AC025716-21|AAT39978.1| 586|Caenorhabditis elegans Hypothetical... 28 8.3
AC025716-20|AAT39977.2| 946|Caenorhabditis elegans Hypothetical... 28 8.3
>Z49130-3|CAA88968.1| 395|Caenorhabditis elegans Hypothetical
protein T06D8.5 protein.
Length = 395
Score = 142 bits (345), Expect = 2e-34
Identities = 84/200 (42%), Positives = 105/200 (52%), Gaps = 1/200 (0%)
Frame = -2
Query: 710 SDVPRVSQYRLAAHLSXXXXXXXXXXXXXXXXL-RPFPAAATLQKIKELKSITGLAHAVK 534
SDVPRVSQYRLA HL+ L +P + K+ L+ G+ H K
Sbjct: 197 SDVPRVSQYRLATHLTMAFVLYSIFFWNGLSHLVKPHDLSKVRSKLGALR---GMTHGSK 253
Query: 533 AMTFITAVSGAFVAGLDAGLVYNSFPKMGDNWLPDDILAFSPTIKNFTENPTTVQFDHRV 354
M F TA+ GAFVAGLDAGLVYNS+PK +NW+P+++L+ SPT KNF EN TVQF HR
Sbjct: 254 LMVFSTAIMGAFVAGLDAGLVYNSWPKFAENWIPENMLSRSPTWKNFFENDVTVQFVHRN 313
Query: 353 LGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGVATLLCYVPTALAASHQ 174
L LGV TL+ YVP LAA HQ
Sbjct: 314 LAYLTVISVLSTFLIGRRAPIPKRTRMALNLTVAAVFGQAALGVFTLINYVPVWLAACHQ 373
Query: 173 AGSLVLLSLAVWLTHEVKLL 114
+GS+ LLS +WL+HE++ L
Sbjct: 374 SGSMALLSSVLWLSHELRRL 393
>Z99710-9|CAN99658.1| 402|Caenorhabditis elegans Hypothetical
protein F08A8.5b protein.
Length = 402
Score = 31.1 bits (67), Expect = 0.89
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = -2
Query: 605 FPAAATLQKIKELKSITGLAHAVKAMTFITAVSGAFVAGLDAGLVYNSFPKMGDNW---- 438
FP+ K+ E+ S+ G+A +++ I A + +F+ L+ + FPK+ D +
Sbjct: 90 FPSGGLGNKLFEIISLHGIATSLQRKAVINATNPSFIETLNRN-IQPLFPKLADQFTLRI 148
Query: 437 LPDDILAFSPT 405
+PD ++ T
Sbjct: 149 IPDSLVTHQQT 159
>Z99710-8|CAB16868.1| 383|Caenorhabditis elegans Hypothetical
protein F08A8.5a protein.
Length = 383
Score = 31.1 bits (67), Expect = 0.89
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = -2
Query: 605 FPAAATLQKIKELKSITGLAHAVKAMTFITAVSGAFVAGLDAGLVYNSFPKMGDNW---- 438
FP+ K+ E+ S+ G+A +++ I A + +F+ L+ + FPK+ D +
Sbjct: 71 FPSGGLGNKLFEIISLHGIATSLQRKAVINATNPSFIETLNRN-IQPLFPKLADQFTLRI 129
Query: 437 LPDDILAFSPT 405
+PD ++ T
Sbjct: 130 IPDSLVTHQQT 140
>EF015633-1|ABK20307.1| 383|Caenorhabditis elegans alpha
1,2-fucosyltransferase protein.
Length = 383
Score = 31.1 bits (67), Expect = 0.89
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = -2
Query: 605 FPAAATLQKIKELKSITGLAHAVKAMTFITAVSGAFVAGLDAGLVYNSFPKMGDNW---- 438
FP+ K+ E+ S+ G+A +++ I A + +F+ L+ + FPK+ D +
Sbjct: 71 FPSGGLGNKLFEIISLHGIATSLQRKAVINATNPSFIETLNRN-IQPLFPKLADQFTLRI 129
Query: 437 LPDDILAFSPT 405
+PD ++ T
Sbjct: 130 IPDSLVTHQQT 140
>L16685-1|AAA28170.3| 145|Caenorhabditis elegans Hypothetical
protein ZC21.8 protein.
Length = 145
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +1
Query: 514 AVMKVIALTACARPVMLFNS-----LIFCKVAAAGKGRSTLRAPPSNPAYNMNAR 663
A++K I L + +++F S L+ C A +GKG +T ++ N N+NA+
Sbjct: 3 AILKSIMLLKYLQFIIIFCSGLCMALVICTKAKSGKGTNTAKSSGGNNGTNLNAK 57
>AC025716-21|AAT39978.1| 586|Caenorhabditis elegans Hypothetical
protein Y39G10AR.18b protein.
Length = 586
Score = 27.9 bits (59), Expect = 8.3
Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 3/102 (2%)
Frame = +1
Query: 415 NAKMSSGSQLSP-ILGKEL*TRPASRPA--TKAPETAVMKVIALTACARPVMLFNSLIFC 585
N+ +S ++ SP G L PA T P A A A P N + C
Sbjct: 248 NSVLSQPTEASPSAFGPPLAHLPAPVAIYPTPPPPPAPAPAAPQQASAAPAAP-NVMPVC 306
Query: 586 KVAAAGKGRSTLRAPPSNPAYNMNARLKCAASLYCETLGTSE 711
AA + R T PP++P YNM A +C T++
Sbjct: 307 TEIAAEQ-RHTFMIPPTDPFYNMIVSYYFAMKQFCNQSKTAD 347
>AC025716-20|AAT39977.2| 946|Caenorhabditis elegans Hypothetical
protein Y39G10AR.18a protein.
Length = 946
Score = 27.9 bits (59), Expect = 8.3
Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 3/102 (2%)
Frame = +1
Query: 415 NAKMSSGSQLSP-ILGKEL*TRPASRPA--TKAPETAVMKVIALTACARPVMLFNSLIFC 585
N+ +S ++ SP G L PA T P A A A P N + C
Sbjct: 608 NSVLSQPTEASPSAFGPPLAHLPAPVAIYPTPPPPPAPAPAAPQQASAAPAAP-NVMPVC 666
Query: 586 KVAAAGKGRSTLRAPPSNPAYNMNARLKCAASLYCETLGTSE 711
AA + R T PP++P YNM A +C T++
Sbjct: 667 TEIAAEQ-RHTFMIPPTDPFYNMIVSYYFAMKQFCNQSKTAD 707
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,377,770
Number of Sequences: 27780
Number of extensions: 264365
Number of successful extensions: 880
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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