Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d06r
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56090.1 68418.m06998 cytochrome oxidase assembly family prot...   134   5e-32
At2g27320.1 68415.m03284 hypothetical protein   contains Pfam pr...    29   2.6  
At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical...    29   4.5  

>At5g56090.1 68418.m06998 cytochrome oxidase assembly family protein
           contains PF02628: Cytochrome oxidase assembly protein
          Length = 457

 Score =  134 bits (325), Expect = 5e-32
 Identities = 78/206 (37%), Positives = 104/206 (50%), Gaps = 5/206 (2%)
 Frame = -2

Query: 701 PRVSQYRLAAHLSXXXXXXXXXXXXXXXXLRPFPAAATLQKIKELKSITGLAHAVKAMTF 522
           PRVS YRLAAHL+                + P P A +L  ++    +  LA  V  +  
Sbjct: 245 PRVSPYRLAAHLTSAFAIYCGLFWTALSVVMPEPPAESLAWVRGAAKVKKLALPVSLIVG 304

Query: 521 ITAVSGAFVAGLDAGLVYNSFPKMGDNWLPDDILAFSPTIKNFTENPTTVQFDHRVLGXX 342
           ITA+SGAFVAG DAG  +N+FPKMGD W+PD+I    P ++NF EN  TVQ DHR+L   
Sbjct: 305 ITAISGAFVAGNDAGRAFNTFPKMGDTWIPDNIFEMKPLLRNFFENTATVQLDHRLLATT 364

Query: 341 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGVATLLCYVPTALAASHQAGSL 162
                                                LGV+TLL YVP +L ++HQAG+L
Sbjct: 365 TLIAIGTMWWFTRKLDIHPAVKALIGSTVGMTAVQVTLGVSTLLSYVPVSLGSAHQAGAL 424

Query: 161 VLLSLAVWLTHEVK-----LLKYIPK 99
            LL+L + L H ++     LLK +P+
Sbjct: 425 TLLTLMLLLNHTLRRPSPSLLKSLPQ 450


>At2g27320.1 68415.m03284 hypothetical protein   contains Pfam
           profile PF03080: Arabidopsis proteins of unknown
           function
          Length = 339

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 669 LKSGVHIVR--GITWRSPEGAPPLPGGGYFAENQGVEEHHRPRARRQGDDF 523
           L  G  +VR  G T+ SP+G  P  G GYF  +   +  H  + + +  ++
Sbjct: 268 LNKGASLVRFGGNTFPSPDGFSPPMGNGYFPSHDFYKSSHFSKVKVKNSNY 318


>At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical to
           EIN2 [Arabidopsis thaliana] gi|5231113|gb|AAD41076;
           member of the natural resistance-associated macrophage
           protein (NRAMP) metal transporter family, PMID:11500563;
           metal transport capacity has not been shown,
           PMID:11500563, PMID:1038174
          Length = 1294

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -2

Query: 572 ELKSITGLAHAVKAMTFITAVSGAFVAGLDAGL--VYNSFPKMG 447
           +L  + G+AHA+  +  +   +G F+A +DA L  V+ SF + G
Sbjct: 109 DLTMVVGVAHALNLLFGVELSTGVFLAAMDAFLFPVFASFLENG 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,757,426
Number of Sequences: 28952
Number of extensions: 251803
Number of successful extensions: 802
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)