Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d06f
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    74   2e-14
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    35   0.011
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    28   1.00 
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   7.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   7.0  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   7.0  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    25   7.0  

>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 32/64 (50%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
 Frame = +2

Query: 452 SRAVGYWLLGCSGMVFTAVVLGGVTRLTESGLSMVTWR-LLGEKMPTNEEEWQKEFEKYQ 628
           S+ V +WLLG S +V   VV+GG+TRLTESGLS+  W+ + G   P  +E+W +EFE Y+
Sbjct: 95  SKKVAFWLLGSSALVLAIVVVGGITRLTESGLSITEWKPITGVIPPLTDEQWNQEFELYK 154

Query: 629 QYPE 640
           + PE
Sbjct: 155 KSPE 158


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 34.7 bits (76), Expect = 0.011
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 467 YWLLGCSGMVFTAVVLGGVTRLTESGLSMVTWRLLGEKMPTNEE 598
           YW  G S   F    +G V +LT  GLS +T+++L +  P N +
Sbjct: 133 YWGCGLSRQAFPNQRIGSVDQLTTKGLSKLTYKVLEKLFPENTQ 176


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 536 ESGLSMVTWRLLGEKMPTNEEEWQKEFEKYQQ 631
           E  L    W L+ E +PT+   WQ   EK+++
Sbjct: 36  EYSLRAKAWMLMLEFLPTDRSNWQSVLEKHRK 67


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 540 DSVSRVTPPSTTAVKTIPLHPSSQYPTALDVFG 442
           D+  R+TP  ++ V  +PL  +   P  ++V G
Sbjct: 242 DAAPRITPTKSSGVNLMPLSNAPSPPKQMNVVG 274


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
 Frame = +2

Query: 197 SIPNSCTAMLNLSRLCRCKQSL--SAVQSKLLVSSRNGFSNSIISRQIITTTKMHRYNIL 370
           S+ +S T   +L+       SL  S++ S  L SS    S+S+ S    +TT     +  
Sbjct: 118 SLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTT-SSSLASSSTNSTTSATPTSSA 176

Query: 371 GRFSLSSTIKSNSIIMRFCSSTPKPKTSRA 460
              SLSST  SNS      +S+    T+ A
Sbjct: 177 TSSSLSSTAASNSATSSSLASSSLNSTTSA 206


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 257 SLSAVQSKLLVSSRNGFSNSIISRQIITTTKMHRYNILGRFSLSSTIKSNSIIM 418
           ++SA  ++  V   N  S  ++SRQ ITT   +  +     S +S I   SI++
Sbjct: 232 AISANSNEPGVIGPNSLSRELVSRQTITTLTDYMTDSKAPHSATSLINGVSIVI 285


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -3

Query: 561 HVTIDKPDSVSRVTPPSTTAVKTIP--LHPSS 472
           H++  KP+S     PP+  ++   P  +HPSS
Sbjct: 291 HLSAQKPNSNYYTGPPTPVSISNTPENIHPSS 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,194,457
Number of Sequences: 5004
Number of extensions: 38733
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)