Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d06f
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1123 + 24474434-24474538,24474800-24474860,24475050-244754...    86   2e-17
12_02_1066 + 25785749-25785868,25785953-25786141,25786250-257864...    31   0.78 
12_02_1031 + 25537495-25537552,25538774-25538836,25538966-255392...    29   3.1  
04_03_0712 + 18959770-18959930,18961115-18961238                       27   9.6  
02_01_0302 - 2021221-2023305                                           27   9.6  

>08_02_1123 +
           24474434-24474538,24474800-24474860,24475050-24475477,
           24475915-24476231,24476991-24477216,24477302-24477547,
           24477635-24477745,24478051-24478182,24478297-24478325,
           24478352-24478502
          Length = 601

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 37/69 (53%), Positives = 46/69 (66%)
 Frame = +2

Query: 434 TPKPKTSRAVGYWLLGCSGMVFTAVVLGGVTRLTESGLSMVTWRLLGEKMPTNEEEWQKE 613
           T  P+  +A+G WL GC+  VF  V+LGGVTRLT SGLSM  W+  G   P ++EEW  E
Sbjct: 233 TKGPQAQKAIGIWLFGCATWVFGLVILGGVTRLTRSGLSMTDWKFTGSLPPMSDEEWLLE 292

Query: 614 FEKYQQYPE 640
           FEKY+  PE
Sbjct: 293 FEKYKLSPE 301


>12_02_1066 +
           25785749-25785868,25785953-25786141,25786250-25786414,
           25786649-25786999,25787924-25788001,25788137-25788277,
           25788415-25788459,25788597-25788763,25788833-25788911,
           25788985-25789067,25789219-25789348,25789432-25789564,
           25789955-25790103,25790339-25790534,25791086-25791288
          Length = 742

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = -3

Query: 600 SSSFVGIFSPRSLHV----TID-KPDSVSRVTPPSTTAVKTIPLHPSSQYPTALDVFG 442
           S  F+GI + R LHV    T + KPD + ++    T  + T+  HPS +   + D  G
Sbjct: 170 SGEFLGITNKRKLHVWRIPTKNFKPDKIRKIKLSHTKNLNTLAFHPSERIVASGDATG 227


>12_02_1031 +
           25537495-25537552,25538774-25538836,25538966-25539279,
           25539361-25539612,25539698-25540411
          Length = 466

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 549 DKPDSVSRVTPPSTTAVKTIPLHPSSQYPTALDVFGLGVEEQNRII 412
           DK        PP+TT+ ++ P H  S+ P  L+V   G EE  R++
Sbjct: 200 DKDKHARSPRPPTTTSRRSSPQHHRSRKP--LEVVDRGSEENVRVV 243


>04_03_0712 + 18959770-18959930,18961115-18961238
          Length = 94

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = -3

Query: 618 SNSFCHSSSFVGIFSPRSLHVTIDKPDSVSRVTPPSTTAVKTIPLHPSSQYPTALDVFGL 439
           +N   +SSS  G  S  +  +    P+   R+ PP   A   + LH   ++   L V  +
Sbjct: 24  ANRSNNSSSSSGRTSSPAALLRWGAPEPAPRLRPPRVVASPEVGLHSHPRHEENLVVVDV 83

Query: 438 GVEEQNRI 415
           GV +  R+
Sbjct: 84  GVNQCQRL 91


>02_01_0302 - 2021221-2023305
          Length = 694

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -3

Query: 600 SSSFVGIFSPRSLHVTIDKPDSVSRVT-PPSTTAVKTIPLHPSSQYP 463
           SS+     SP   H T   P   S  T PPS +  ++ P HPS   P
Sbjct: 500 SSTTPSYHSPPQGHTTPSHPSPPSSSTAPPSHSPPQSTPTHPSYPSP 546


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,236,452
Number of Sequences: 37544
Number of extensions: 224980
Number of successful extensions: 648
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)