Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d06f
(641 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06) 31 0.60
SB_8945| Best HMM Match : ABC-3 (HMM E-Value=0.26) 31 0.60
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 31 0.60
SB_9604| Best HMM Match : Cbl_N3 (HMM E-Value=1.2) 31 1.1
SB_4171| Best HMM Match : Cbl_N3 (HMM E-Value=1.2) 31 1.1
SB_6707| Best HMM Match : Mucin (HMM E-Value=9.3) 30 1.8
SB_35583| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_13011| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_26065| Best HMM Match : Peptidase_A17 (HMM E-Value=6.5e-19) 28 5.6
SB_24095| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36) 28 7.4
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_21631| Best HMM Match : SRP19 (HMM E-Value=7.9) 27 9.8
SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30) 27 9.8
SB_11712| Best HMM Match : Trypsin (HMM E-Value=4) 27 9.8
SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27) 27 9.8
SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14) 27 9.8
SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06)
Length = 606
Score = 31.5 bits (68), Expect = 0.60
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Frame = +2
Query: 293 SRNGFSNSIISRQIITTTK-------MHRYNILGRFSLSSTIKSNSIIMRFCSSTPKPKT 451
+ NGF+N S ++ K M +Y +LG + +++ I+ C STP+ T
Sbjct: 436 TENGFTNQTTSCKVYHVVKGFNILWQMPQYALLGMSEVFASMTGLEIVYSLCPSTPQSVT 495
Query: 452 SRAVGYWLLGCSGMVFTAVVL 514
S Y ++ C G + + V +
Sbjct: 496 SAI--YNIMICIGSILSFVTM 514
>SB_8945| Best HMM Match : ABC-3 (HMM E-Value=0.26)
Length = 555
Score = 31.5 bits (68), Expect = 0.60
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 431 STPKPKTSRAVGYWLLGCSGMVFTAVVLGGVTRLTESGLSMVTW 562
S P+ ++ GYW L C + A V+ VT E+G + V++
Sbjct: 267 SKPERAAPQSPGYWALFCETWLTPAYVIAAVTLTLETGTAFVSY 310
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 31.5 bits (68), Expect = 0.60
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -3
Query: 540 DSVSRVTPPSTTAVKTIPLHPSSQYPTALDVFGLGVEEQ 424
++ S P+T+AV T P++ P LD GLGVE++
Sbjct: 384 EAPSTTEVPTTSAVPTTTGAPTTAPPDCLDALGLGVEDR 422
>SB_9604| Best HMM Match : Cbl_N3 (HMM E-Value=1.2)
Length = 317
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +1
Query: 313 QYYFKANYHNYKNAQI*HPRKVQSKQHNKIKQYYNAILLFNS*TEDVKSSWILATRMQWY 492
QY FK +H+ A I K+ S NK ++ + + S DV + IL T++Q+Y
Sbjct: 212 QYGFK-KHHSTALALIHLYDKLSSAIDNK--EFTMGVFIDLSKAFDVVNHEILLTKLQYY 268
Query: 493 GLHCCSTRW--RHPTDRVRFV 549
G+ S +W + ++R++FV
Sbjct: 269 GVRETSLKWFESYLSERMQFV 289
>SB_4171| Best HMM Match : Cbl_N3 (HMM E-Value=1.2)
Length = 243
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +1
Query: 313 QYYFKANYHNYKNAQI*HPRKVQSKQHNKIKQYYNAILLFNS*TEDVKSSWILATRMQWY 492
QY FK +H+ A I K+ S NK ++ + + S DV + IL T++Q+Y
Sbjct: 138 QYGFK-KHHSTALALIHLYDKLSSAIDNK--EFTMGVFIDLSKAFDVVNHEILLTKLQYY 194
Query: 493 GLHCCSTRW--RHPTDRVRFV 549
G+ S +W + ++R++FV
Sbjct: 195 GVRETSLKWFDSYLSERMQFV 215
>SB_6707| Best HMM Match : Mucin (HMM E-Value=9.3)
Length = 186
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 431 STPKPKTSRAVGYWLLGCSGMVFTAVVLGGVTRLTESGLSMVTW 562
S P+ ++ GYW L C A V+ VT E+G + V++
Sbjct: 140 SKPERAAPQSPGYWALFCETWRTPAYVIAAVTLTLETGTAFVSY 183
>SB_35583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 989
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 514 RWRHPTDRVRFVYGHVETPRREDAHE*RGVAKRV 615
RW +D + F + HVE P E+ RGV K++
Sbjct: 395 RWDPQSDTLGFAFAHVERPPAEETK--RGVLKKL 426
>SB_13011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 571
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 514 RWRHPTDRVRFVYGHVETPRREDAHE*RGVAKRV 615
RW +D + F + HVE P E+ RGV K++
Sbjct: 198 RWDPQSDTLGFAFAHVERPPAEETK--RGVLKKL 229
>SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1497
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 514 RWRHPTDRVRFVYGHVETPRREDAHE*RGVAKRV 615
RW +D + F + HVE P E+ RGV K++
Sbjct: 823 RWDPQSDTLGFAFAHVERPPAEETK--RGVLKKL 854
>SB_26065| Best HMM Match : Peptidase_A17 (HMM E-Value=6.5e-19)
Length = 317
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 514 RWRHPTDRVRFVYGHVETPRREDAHE*RGVAKRV 615
RW +D + F + HVE P E+ RGV K++
Sbjct: 48 RWDPQSDTLGFAFAHVERPPAEETK--RGVLKKL 79
>SB_24095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1162
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 514 RWRHPTDRVRFVYGHVETPRREDAHE*RGVAKRV 615
RW +D + F + HVE P E+ RGV K++
Sbjct: 578 RWDPQSDTLGFAFAHVERPPAEETK--RGVLKKL 609
>SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36)
Length = 1198
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 320 ISRQIITTTKMHRYNILGRFSLSSTIKSNSIIMRFCSSTPK 442
I+++ I H +N LG+ S TI+ FC +TP+
Sbjct: 231 INKETIVRKNPHLFNGLGKLSGEYTIRLKEGAKSFCLTTPR 271
>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = +2
Query: 335 ITTTKMHRYNILGRFSLSSTIKSNSIIMRFCSSTPKPKTSRAVGYWLLGCSGMVFTAVVL 514
+TT KM ++ L S +K S+I K R++ W LGC + + +L
Sbjct: 684 VTTEKMALFSGEVDHPLVSQLKDPSVIKSGAGDGRYSKGKRSLLTWALGCGALKLNSDLL 743
Query: 515 GGVTRLTESGLSMV 556
T + +SM+
Sbjct: 744 DLETSSKDGTISML 757
>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1571
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 320 ISRQIITTTKMHRYNILGRFSLSSTIKSNSIIMRFCSSTPK 442
I+++ I H +N LG+ S TI+ FC +TP+
Sbjct: 402 INKETIVRKNPHLFNGLGKLSGEYTIRLKEEAKPFCLTTPR 442
>SB_21631| Best HMM Match : SRP19 (HMM E-Value=7.9)
Length = 201
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 320 ISRQIITTTKMHRYNILGRFSLSSTIKSNSIIMRFCSSTPK 442
I+++ I H +N LG+ S TI+ FC +TP+
Sbjct: 49 INKETIVRKNPHPFNGLGKLSGEYTIRLKEGAKPFCLTTPR 89
>SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)
Length = 1191
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 320 ISRQIITTTKMHRYNILGRFSLSSTIKSNSIIMRFCSSTPK 442
I+++ I H +N LG+ S TI+ FC +TP+
Sbjct: 398 INKETIVRKNPHPFNGLGKLSGEYTIRLKEGAKPFCLTTPR 438
>SB_11712| Best HMM Match : Trypsin (HMM E-Value=4)
Length = 562
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 539 SGLSMVTWRLLGEKMPTNEEEWQK 610
SGLSM WR+L E EEE +K
Sbjct: 59 SGLSMEGWRMLNEVPRKKEEETKK 82
>SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27)
Length = 1154
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +3
Query: 243 VDVSSL*VQCKVNSWCHLEMASVTVL---FQGKLSQLQKCT 356
++++S + +V++ C + + S L ++GKL QLQKCT
Sbjct: 128 IEINSRPLCFEVDTGCPVTLISEETLNSVYEGKLPQLQKCT 168
>SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
Length = 659
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = -3
Query: 618 SNSFCHSSSFVGIFSPRSLHVTIDKPDSVSRVTPPSTTAVKT-IPLHP--SSQYPTALDV 448
S++ CH++S S H T KP + S + P ++T +T P+ P S+Q T+ +
Sbjct: 214 SSAICHTTSTQPQTSSTVGHTTSTKPQTSSPIGPTTSTQHQTSSPIGPTTSTQPQTSPPI 273
Query: 447 F 445
F
Sbjct: 274 F 274
>SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1017
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 320 ISRQIITTTKMHRYNILGRFSLSSTIKSNSIIMRFCSSTPK 442
I+++ I H +N LG+ S TI+ FC +TP+
Sbjct: 395 INKETIVRKNPHLFNGLGKLSGEYTIRLKEGAKPFCLTTPR 435
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,221,761
Number of Sequences: 59808
Number of extensions: 287526
Number of successful extensions: 984
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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