Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d06f
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49130-3|CAA88968.1|  395|Caenorhabditis elegans Hypothetical pr...    90   1e-18
U80031-6|AAB37618.2|  491|Caenorhabditis elegans Hypothetical pr...    31   0.93 
Z73899-9|CAA98072.2|  905|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z11576-1|CAA77663.1|  625|Caenorhabditis elegans aromatic-L-amin...    30   1.2  
AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z68334-2|CAA92728.2|  797|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z54216-10|CAA90949.2|  797|Caenorhabditis elegans Hypothetical p...    28   4.9  
AF173174-1|AAF13167.1|  796|Caenorhabditis elegans CLC chloride ...    28   4.9  
AB035090-1|BAA86959.1|  797|Caenorhabditis elegans clc chloride ...    28   4.9  
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor...    28   6.5  
U00056-1|AAN65308.2|  476|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z49130-3|CAA88968.1|  395|Caenorhabditis elegans Hypothetical
           protein T06D8.5 protein.
          Length = 395

 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 38/66 (57%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
 Frame = +2

Query: 446 KTSRAVGYWLLGCSGMVFTAVVLGGVTRLTESGLSMVTWRLLGE-KMPTNEEEWQKEFEK 622
           K+ + +G+WL+GC+GM + AV LGGVTRLTESGLSMV W L    K P  +++W++EFEK
Sbjct: 46  KSRKRIGWWLMGCAGMCYGAVALGGVTRLTESGLSMVNWDLFRTMKPPFGQKQWEEEFEK 105

Query: 623 YQQYPE 640
           Y+ YPE
Sbjct: 106 YKAYPE 111


>U80031-6|AAB37618.2|  491|Caenorhabditis elegans Hypothetical
           protein B0554.7 protein.
          Length = 491

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 431 STPKPKTSRAVGYWLLGCSGMVFTAVVLGGVTRLTE 538
           ST +   S     W +GC  ++  A++LGG+T ++E
Sbjct: 133 STRRSIESNVSLQWAIGCGSLILGAMILGGMTWISE 168


>Z73899-9|CAA98072.2|  905|Caenorhabditis elegans Hypothetical
           protein ZK829.2 protein.
          Length = 905

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 323 SRQIITTTKMHRYNILGRFSLSSTIKSNSIIMRFCSSTPK 442
           S  +     ++R N  G  SL+S +  N  ++R C ++PK
Sbjct: 747 SNDMFNKALLYRCNETGNVSLASCVLQNKFVIRMCINSPK 786


>Z11576-1|CAA77663.1|  625|Caenorhabditis elegans aromatic-L-amino
           acid  decarboxylaseprotein.
          Length = 625

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 323 SRQIITTTKMHRYNILGRFSLSSTIKSNSIIMRFCSSTPK 442
           S  +     ++R N  G  SL+S +  N  ++R C ++PK
Sbjct: 467 SNDMFNKALLYRCNETGNVSLASCVLQNKFVIRMCINSPK 506


>AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.4 protein.
          Length = 466

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = -3

Query: 600 SSSFVGIFSPRSLHVTIDKPDSVSRVTP----PSTTAVKTIPLHPSSQYPTALDVFG 442
           SSS   +F P +     D+ D     TP    P+TTA   +P  PSS    A ++FG
Sbjct: 387 SSSSYSLFEPPAEWHKFDREDLPIDETPSASSPTTTASLYLPAPPSSSVRAANELFG 443


>Z68334-2|CAA92728.2|  797|Caenorhabditis elegans Hypothetical
           protein C07H4.2 protein.
          Length = 797

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 479 GCSGMVFTAVVLGGVTRLTESGLSMVTWRLLG 574
           G   MV  A VLGGVTR+T S L ++ + L G
Sbjct: 544 GLYAMVGAAAVLGGVTRMTVS-LVVIMFELTG 574


>Z54216-10|CAA90949.2|  797|Caenorhabditis elegans Hypothetical
           protein C07H4.2 protein.
          Length = 797

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 479 GCSGMVFTAVVLGGVTRLTESGLSMVTWRLLG 574
           G   MV  A VLGGVTR+T S L ++ + L G
Sbjct: 544 GLYAMVGAAAVLGGVTRMTVS-LVVIMFELTG 574


>AF173174-1|AAF13167.1|  796|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 479 GCSGMVFTAVVLGGVTRLTESGLSMVTWRLLG 574
           G   MV  A VLGGVTR+T S L ++ + L G
Sbjct: 544 GLYAMVGAAAVLGGVTRMTVS-LVVIMFELTG 574


>AB035090-1|BAA86959.1|  797|Caenorhabditis elegans clc chloride
           channel homologue protein.
          Length = 797

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 479 GCSGMVFTAVVLGGVTRLTESGLSMVTWRLLG 574
           G   MV  A VLGGVTR+T S L ++ + L G
Sbjct: 544 GLYAMVGAAAVLGGVTRMTVS-LVVIMFELTG 574


>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
           abnormality protein1, isoform h protein.
          Length = 2006

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
 Frame = +2

Query: 263 SAVQSKLLVSSRNGFSNSIISRQIITTTKMHRYNILGRFSLSSTIKSN-SIIMRFCSSTP 439
           S +  K   +   GF N  I  ++  TTK  R   +  F     +  N S   +  S T 
Sbjct: 737 SELPEKFPPAHEQGFVNFAIKSEVTATTKFDRLKYMAEFRKLLALPDNFSTTPKQSSPTS 796

Query: 440 KPKTSR 457
            P T+R
Sbjct: 797 SPTTTR 802


>U00056-1|AAN65308.2|  476|Caenorhabditis elegans Hypothetical
           protein R05H11.1 protein.
          Length = 476

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +1

Query: 316 YYFKAN-YHNYKNAQI*HPRKVQSKQHNKIKQ-YYNAIL 426
           YY K++ + NY   +  HP++V+S Q + I Q Y N +L
Sbjct: 107 YYLKSSKFQNYMFCKRSHPKEVKSLQPSTIPQNYINGML 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,032,132
Number of Sequences: 27780
Number of extensions: 215670
Number of successful extensions: 654
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)