Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d06f
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    26   0.36 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.82 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.82 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.1  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   4.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.7  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 428 SSTPKPKTSRAVGYWLLGCSGMVFTAVV 511
           +S PK    +A   W LGC+  +F A+V
Sbjct: 283 NSLPKVSYIKASEIWFLGCTIFLFAAMV 310


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
 Frame = +2

Query: 383 LSSTIKSNSIIMRFCSSTPKPKTSRAVGYWLLGCSGM-VFTAVVLGGVTRLTESGLSMVT 559
           +++ +  ++I +   +  PK + + A+ ++LL   G  + T +   GV   T+ G     
Sbjct: 281 ITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFGYCIATLLEFAGVHYFTKVGS---- 336

Query: 560 WRLLGEKMPTNEEEWQKEFEK-YQ 628
               GE +P  EEEW+ E E  YQ
Sbjct: 337 ----GE-IPLEEEEWENENESDYQ 355


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 473 LLGCSGMVFTAVVLGGVTRLTESGLSM 553
           L+ CSG+VF  +++ GV  + +   +M
Sbjct: 769 LIICSGLVFVQILINGVWMIIDPAKAM 795


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 428 SSTPKPKTSRAVGYWLLGC 484
           S+ P+P  + A+G+W + C
Sbjct: 371 SAIPEPSKNPAMGHWQMSC 389


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 428 SSTPKPKTSRAVGYWLLGCSGMVFTAV 508
           S  P     +A+  W+ GC   VF A+
Sbjct: 251 SDIPPVAYVKALDVWMAGCMMFVFAAL 277


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 458 AVGYWLLGCSGMVFTAVVLGGVTRLTESG 544
           AV   +  C G+ FTA    G    TE G
Sbjct: 277 AVSGMVFDCGGLEFTAAPFNGWYMSTEIG 305


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 431 STPKPKTSRAVGYWLLGCSGMVFTAVV 511
           S P     +A+  W+  CS  VF +++
Sbjct: 266 SLPPVSYVKAIDVWMSSCSVFVFLSLM 292


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 359 YNILGRFSLSSTIKSNSIIMRFCSSTPKPKTSRAVGYWLLGC 484
           Y ++G    SS    ++      S++P+P +S A    L GC
Sbjct: 816 YLMVGNSPASSPRYLSAAATSSTSTSPRPASSTAATLVLSGC 857


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,894
Number of Sequences: 438
Number of extensions: 2721
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)