Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d06f
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56090.1 68418.m06998 cytochrome oxidase assembly family prot...    87   7e-18
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /...    29   3.5  
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /...    29   3.5  
At4g18640.1 68417.m02759 leucine-rich repeat transmembrane prote...    28   6.1  

>At5g56090.1 68418.m06998 cytochrome oxidase assembly family protein
           contains PF02628: Cytochrome oxidase assembly protein
          Length = 457

 Score = 87.4 bits (207), Expect = 7e-18
 Identities = 44/89 (49%), Positives = 54/89 (60%)
 Frame = +2

Query: 374 RFSLSSTIKSNSIIMRFCSSTPKPKTSRAVGYWLLGCSGMVFTAVVLGGVTRLTESGLSM 553
           R S  ++I S S        T  P+  + VG WL G +  VF+ VVLGGVTRLT SGLSM
Sbjct: 70  RMSTVASISSESKEGLKLLVTGGPQAQKWVGIWLFGSAAWVFSMVVLGGVTRLTRSGLSM 129

Query: 554 VTWRLLGEKMPTNEEEWQKEFEKYQQYPE 640
             W+  GE  P ++E W KEFEKY+Q PE
Sbjct: 130 TDWKFTGEFPPLSDEAWAKEFEKYKQSPE 158


>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
           RNA-binding protein cp 29 nearly identical to SP|Q43349
           29 kDa ribonucleoprotein, chloroplast precursor
           (RNA-binding protein cp29) {Arabidopsis thaliana}
          Length = 334

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -3

Query: 600 SSSFVGIFSPRSLHVTIDKPDSVSRVTPPS 511
           S+S +  F+P+SL + + +P SVS V PPS
Sbjct: 4   SASSLSAFNPKSLPLCVSRPASVS-VLPPS 32


>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
           RNA-binding protein cp 29 nearly identical to SP|Q43349
           29 kDa ribonucleoprotein, chloroplast precursor
           (RNA-binding protein cp29) {Arabidopsis thaliana}
          Length = 342

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -3

Query: 600 SSSFVGIFSPRSLHVTIDKPDSVSRVTPPS 511
           S+S +  F+P+SL + + +P SVS V PPS
Sbjct: 4   SASSLSAFNPKSLPLCVSRPASVS-VLPPS 32


>At4g18640.1 68417.m02759 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 686

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -3

Query: 306 KPFRDDTRSLLCTALRDCLHRQSRERFSI 220
           K F+++   ++C  +R+CL  + R+R S+
Sbjct: 620 KTFKEEELEVICDVIRECLKTEQRQRPSM 648


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,120,817
Number of Sequences: 28952
Number of extensions: 194785
Number of successful extensions: 592
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)