Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d05r
         (488 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    23   2.0  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    21   6.0  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   7.9  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 61  LIHSIHMNGHLV 96
           LIHS H+NG +V
Sbjct: 198 LIHSTHLNGDIV 209


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 343 STPVLCRTLTNKIEDI 296
           ST  LC T+  K++DI
Sbjct: 167 STIFLCDTILKKVDDI 182


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +1

Query: 97  YLN*YTLVDDPLGHYLHHTKQLFQLL 174
           Y++   +  + L  +L H +Q+F+ L
Sbjct: 457 YIDDLLVASETLNEHLEHLRQVFEKL 482


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,577
Number of Sequences: 336
Number of extensions: 2347
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11420693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)