Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d05r
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.1  
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   2.7  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    26   3.5  
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    25   8.1  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    25   8.1  
SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy...    25   8.1  

>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 129 SGPLPPSHQTTLSVTSLGGISAIKFTAQFGFTCFGALVNLTSL 257
           S  L P H  T S+    G+S    +  FG  C GA+ N+T++
Sbjct: 432 SKQLHPRHHNTASIVVQVGVS---LSNTFGSICGGAIYNITTV 471


>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 60  LNPQYPHEWSPGLSKLIYT 116
           ++P +PHEW+ G + L+ T
Sbjct: 82  VSPVFPHEWTAGNATLVQT 100


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 224 LFWRISKSYQPVVIRIPFLACMSRNIFNLVRQS 322
           + WR + +  P++IR  ++   + N+FNL  +S
Sbjct: 378 IHWRKAIAIPPLLIRNTYVTSPTANLFNLEEES 410


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 150 HQTTLSVTSLGGISAIKFT 206
           H T +S+T LG I  I FT
Sbjct: 347 HNTKMSITGLGSIMNIHFT 365


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 351 IFNFEHEVIIRDLFMTN*FYYLRFKYVGTYLQGINLTLKKK 473
           I+   H  I++DL     ++Y ++K +  +LQ  N+   K+
Sbjct: 108 IYPLPHCFIVKDLVPDLTYFYKQYKSIEPWLQNDNIPKDKE 148


>SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 144 PSHQTTLSVTSLGGISAIKFTAQFGFTCFGALV 242
           P+H TT+   +L  +S I +   F  +CF  LV
Sbjct: 142 PTHFTTVFFATLPELSYIGWAIAFWLSCFKYLV 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,883,768
Number of Sequences: 5004
Number of extensions: 37924
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)