Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d05r
         (488 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0682 + 24251861-24251911,24252036-24252086,24255244-242553...    35   0.030
06_01_0311 - 2243117-2243185,2243321-2243400,2243554-2243620,224...    33   0.16 
05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,300...    30   0.87 
08_01_0406 + 3607088-3607231,3608900-3608996,3609121-3609185,361...    29   2.0  
07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850...    29   2.0  
11_01_0469 + 3638493-3641166,3641286-3641653                           28   3.5  
06_02_0247 - 13465763-13466227                                         27   6.1  
10_06_0006 - 9496990-9497592,9497695-9497802,9497884-9497997,949...    27   8.1  

>01_05_0682 +
           24251861-24251911,24252036-24252086,24255244-24255310,
           24255405-24255484,24255631-24255696
          Length = 104

 Score = 35.1 bits (77), Expect = 0.030
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 166 ERVVWCDGGSGPEGHPRVYINLDKPGDHSCGYCGLRFIKK 47
           +R+V C GG G + H  V+  L K   H C  C   F+ K
Sbjct: 46  KRIVGCPGGEGEDEHDVVWFWLKKDEPHECPVCSQYFVLK 85


>06_01_0311 -
           2243117-2243185,2243321-2243400,2243554-2243620,
           2245176-2245226,2245317-2245402,2245501-2245612
          Length = 154

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 166 ERVVWCDGGSGPEGHPRVYINLDKPGDHSCGYC 68
           +R+V C GG G + H  V+  L+K   H C  C
Sbjct: 95  KRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVC 127


>05_01_0384 +
           2997465-2999777,2999960-3000035,3003027-3003102,
           3003571-3004442,3004592-3004773,3005206-3005295,
           3005388-3005675,3005776-3005997,3006053-3006133,
           3006634-3006861
          Length = 1475

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 205 VNLIAEIPPKEVTERVVWCDGGSG 134
           V ++  + PK+ T RV W DGG G
Sbjct: 434 VGVVRRVDPKDQTVRVSWLDGGDG 457


>08_01_0406 +
           3607088-3607231,3608900-3608996,3609121-3609185,
           3610268-3610372,3610492-3610554,3610801-3610834,
           3610921-3611043,3611269-3611362,3611452-3611497,
           3611692-3611759,3611843-3611891,3612032-3612097,
           3612443-3612475
          Length = 328

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
 Frame = -2

Query: 205 VNLIAEIPPKEVTERVVWCDG------GSGPEGHPRVYINLD 98
           + LI  +PP +V  R+  CDG       +G  GHP  YI LD
Sbjct: 56  MELINAVPPIKVEGRIAACDGRQDKGRETGSLGHPIEYICLD 97


>07_03_1591 + 27967065-27967090,27967236-27968054,27984940-27985022,
            27985590-27985744,27985956-27986461,27986551-27986703,
            27987146-27987485,27987558-27987822,27987897-27988634,
            27989734-27989779,27989849-27990223,27991511-27991567,
            27991640-27992438
          Length = 1453

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 100  DKPGDHSCGYCGLRFIKKTGH*SLNCPSHLLN 5
            DK     CG+CGL    K GH S  CP++  N
Sbjct: 946  DKKCTRGCGWCGL----KVGHNSSTCPNNPAN 973


>11_01_0469 + 3638493-3641166,3641286-3641653
          Length = 1013

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 57  NLNPQYPHEWSPGLSKLIYTRG*PSGPLPPSHQTTLSVTSLGGISAI 197
           NL  Q+P +W P L +L  +    +G +P S     ++TSL  +S +
Sbjct: 155 NLTGQFPADWPPNLQQLQLSINNLTGTIPAS---LANITSLNVLSCV 198


>06_02_0247 - 13465763-13466227
          Length = 154

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 169 TERVVWCDGGSGPEGHPRV 113
           +ER +WC GG G +G   V
Sbjct: 93  SERRIWCGGGGGDDGEEEV 111


>10_06_0006 -
           9496990-9497592,9497695-9497802,9497884-9497997,
           9498170-9498219,9498346-9498434,9498542-9498738,
           9498877-9499038,9499337-9499455,9499579-9499666,
           9499744-9499849,9499968-9500056,9500167-9500319,
           9500434-9500526,9500625-9500691,9500811-9500923,
           9501544-9501639,9501782-9501961
          Length = 808

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 160 VVWCDGGSGPEGHPRVYINLDKPGDHSCGYCGL 62
           V W +G S     P  Y+  D PG H C Y G+
Sbjct: 631 VAWVNGNSLGRYWPS-YVAADMPGCHHCDYRGV 662


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,396,106
Number of Sequences: 37544
Number of extensions: 228959
Number of successful extensions: 557
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)