Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d05r
         (488 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22918| Best HMM Match : efhand (HMM E-Value=2.8e-09)                74   6e-14
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              30   0.89 
SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0)             29   2.7  

>SB_22918| Best HMM Match : efhand (HMM E-Value=2.8e-09)
          Length = 231

 Score = 74.1 bits (174), Expect = 6e-14
 Identities = 32/53 (60%), Positives = 39/53 (73%)
 Frame = -2

Query: 301 DISTHTGQKWDSDDYRLVRFTNAPKQVNPNWAVNLIAEIPPKEVTERVVWCDG 143
           D  THTGQ WD  DYR VRFTN  K+VNPN+++NL+AE PP ++  R V CDG
Sbjct: 112 DTVTHTGQVWDDADYRNVRFTNREKEVNPNFSINLVAEEPPIKIKGRSVNCDG 164


>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -2

Query: 337 PVLCRTLTNKIE--DISTHTGQKWDSDDYRLVRFTNAPKQVNP 215
           P LC  + +     +++TH  +K++ +D+ L +  NA K++NP
Sbjct: 432 PHLCTHVIHSFSKVNLTTHVMEKYEKNDFDLYKRINALKKINP 474


>SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0)
          Length = 2232

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 214  NWAVNLIAEIPPKEVTERVVWCDGGSGPEGHPRVYINLDK 95
            NW  ++   +  KEV  +VV+  GG GP+ H      LDK
Sbjct: 926  NWETDVSYGVA-KEVNRKVVFMFGGQGPQWHGMAKELLDK 964


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,319,217
Number of Sequences: 59808
Number of extensions: 261917
Number of successful extensions: 595
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)