Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d05r
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71262-3|CAA95810.1|  140|Caenorhabditis elegans Hypothetical pr...   113   5e-26
Z68160-2|CAA92290.2|  403|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AC087794-2|AAG53703.2|  840|Caenorhabditis elegans Hypothetical ...    28   4.2  
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AF000265-6|AAB52944.1|  150|Caenorhabditis elegans Hypothetical ...    27   7.3  

>Z71262-3|CAA95810.1|  140|Caenorhabditis elegans Hypothetical
           protein F22D6.4 protein.
          Length = 140

 Score =  113 bits (273), Expect = 5e-26
 Identities = 53/90 (58%), Positives = 63/90 (70%), Gaps = 1/90 (1%)
 Frame = -2

Query: 322 TLTNKIEDISTHTGQKWDSDDYRLVRFTNAPKQVNPNWAVNLIAEIPPKEVTE-RVVWCD 146
           T  N   D  THTGQ WD  DYRL RF  + K VNPN A++LI + PP++  + RVV+CD
Sbjct: 33  TKNNAQFDKVTHTGQAWDQSDYRLQRFDISKKSVNPNVAMHLIDQRPPEDCGDKRVVFCD 92

Query: 145 GGSGPEGHPRVYINLDKPGDHSCGYCGLRF 56
           GG    GHP+VYINLDKPG H+CGYCG RF
Sbjct: 93  GGHPALGHPKVYINLDKPGVHACGYCGNRF 122


>Z68160-2|CAA92290.2|  403|Caenorhabditis elegans Hypothetical
           protein D1046.2 protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 85  HSCGYCGLRFIKKTG 41
           HSC  CG+ FI KTG
Sbjct: 121 HSCENCGMEFITKTG 135


>AC087794-2|AAG53703.2|  840|Caenorhabditis elegans Hypothetical
           protein Y32G9A.6 protein.
          Length = 840

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
 Frame = -2

Query: 340 TPVLCRTLTNKIE--DISTHTG---QKWDSDDYRLVRFTNAPKQVNP-NWAVNLIAEIPP 179
           TP+LC  +  KIE  D   +TG   +  D      + +     Q++  NWA+N   E+  
Sbjct: 72  TPLLCALMAGKIENADFLANTGADAECHDEQGRNALHWAVVCGQLDSLNWAINKNVEVNA 131

Query: 178 KEVTER-----VVWCDGGSGPEGHPRVYINLDKPG 89
           K+  +R        C     PE    + I L K G
Sbjct: 132 KDQYQRCTPLHYATCSEDIAPEVSQAILITLLKHG 166


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
            C06B8.7 protein.
          Length = 3118

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -2

Query: 379  IMTSCSKLKMLRSTPVLCRTLTNKIEDISTHTGQKWDSDDY-RLVRFTNAPKQ 224
            ++ SC +   +R+  V+CR L  + +++      +WD + + R+++    P+Q
Sbjct: 2015 VVPSCDRQFTIRNAQVVCRELGLQTQNVYHWLTPRWDYNPHVRILKTYMEPRQ 2067


>AF000265-6|AAB52944.1|  150|Caenorhabditis elegans Hypothetical
           protein C18E3.4 protein.
          Length = 150

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 7/24 (29%), Positives = 19/24 (79%)
 Frame = +3

Query: 417 RFKYVGTYLQGINLTLKKKSENFV 488
           + K++  ++QG+N+T +KK++ ++
Sbjct: 125 KLKFIKNFVQGMNMTFQKKNQIYI 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,267,326
Number of Sequences: 27780
Number of extensions: 211506
Number of successful extensions: 476
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)