Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d05r
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    28   0.061
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   1.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   5.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.3  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 27.9 bits (59), Expect = 0.061
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 301 DISTHTGQKWDSDDYRLV-RFTNAPKQVNPNWAVNLIAEIPPKEVTERVVW 152
           D++T     W++D Y+L+ R      + N N  V +  E+    VT++ V+
Sbjct: 119 DVATKEPPPWETDSYKLIGRIAAGEGRFNTNTEVVINTEVKSIPVTKKGVY 169


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 92  WFI*INIHSWMTLWATTS 145
           W   + +HSWMTL  T S
Sbjct: 85  WTSVMELHSWMTLMWTDS 102


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 69  QYPHEWSPGLSKL 107
           QYP +W  G+ KL
Sbjct: 97  QYPWQWGLGICKL 109


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 13/46 (28%), Positives = 18/46 (39%)
 Frame = -2

Query: 229 KQVNPNWAVNLIAEIPPKEVTERVVWCDGGSGPEGHPRVYINLDKP 92
           K +N N    +   I  +E    V W   G   E H + Y   D+P
Sbjct: 176 KHINQNMGDKVEIGIDLREYYPSVEWDILGVPAERHKKYYPCCDEP 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,645
Number of Sequences: 438
Number of extensions: 2583
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)