Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d05r
         (488 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03070.1 68416.m00303 NADH-ubiquinone oxidoreductase-related ...    52   2e-07
At1g52710.1 68414.m05954 cytochrome c oxidase-related similar to...    32   0.24 
At3g15640.1 68416.m01983 cytochrome c oxidase family protein con...    29   1.3  
At1g80230.1 68414.m09389 cytochrome c oxidase family protein con...    29   1.7  
At5g50780.1 68418.m06291 ATP-binding region, ATPase-like domain-...    28   2.9  
At3g12150.1 68416.m01514 expressed protein                             27   6.8  
At4g14920.1 68417.m02292 PHD finger transcription factor, putative     27   9.0  
At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger) fa...    27   9.0  

>At3g03070.1 68416.m00303 NADH-ubiquinone oxidoreductase-related
           contains weak similarity to NADH-ubiquinone
           oxidoreductase 13 kDa-A subunit, mitochondrial precursor
           (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-13KD-A)
           (CI-13KD-A) (Swiss-Prot:P23934) [Bos taurus]
          Length = 110

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = -2

Query: 205 VNLIAEIPPKEVTERVVWCDGGSGPE-GHPRVYINLDKPGDHSCGYCGLRFIKKTGH 38
           + LI+E+PP +V  R+V C+G + P  GHP  +I LD      C YCGLR+++   H
Sbjct: 54  MELISEVPPIKVDGRIVACEGDTNPALGHPIEFICLDLNEPAICKYCGLRYVQDHHH 110


>At1g52710.1 68414.m05954 cytochrome c oxidase-related similar to
           SP|P00428 Cytochrome c oxidase polypeptide Vb (EC
           1.9.3.1) (VI) [Bovine] {Bos taurus}
          Length = 90

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 166 ERVVWCDGGSGPEGHPRVYINLDKPGDHSCGYCGLRF 56
           +R + C GG G +GH  V+  LDK     C  C   F
Sbjct: 38  KRNIGCRGGEGEDGHDVVWFWLDKGKSFECPVCSQYF 74


>At3g15640.1 68416.m01983 cytochrome c oxidase family protein
           contains Pfam domain, PF01215: Cytochrome c oxidase
           subunit Vb
          Length = 176

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 166 ERVVWCDGGSGPEGHPRVYINLDKPGDHSCGYC 68
           +R+V C GG G + H  V+  L+K     C  C
Sbjct: 117 KRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVC 149


>At1g80230.1 68414.m09389 cytochrome c oxidase family protein
           contains Pfam domain, PF01215: Cytochrome c oxidase
           subunit Vb
          Length = 171

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 163 RVVWCDGGSGPEGHPRVYINLDKPGDHSCGYC 68
           R+V C GG G + H  V+  L+K     C  C
Sbjct: 117 RIVGCPGGEGEDEHDVVWFWLEKGKSFECPVC 148


>At5g50780.1 68418.m06291 ATP-binding region, ATPase-like
           domain-containing protein low similarity to microrchidia
           [Homo sapiens] GI:5410257; contains Pfam profile
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein
          Length = 823

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 300 SSILFVKVRHNTGVLLSIFNFEHEVIIRDLFMTN*FYY 413
           +SIL++K+ H   ++L   + EH  I+ D+  T    Y
Sbjct: 408 ASILYLKISHEFRIILRGKDVEHHNIVNDMMQTEKITY 445


>At3g12150.1 68416.m01514 expressed protein
          Length = 363

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 208 AVNLIAEIPPKEVTERVVWCDGGSGPEGHPRVYINLDKPGDHS 80
           A  L A +PP+  T RV W    + P       ++L   GDH+
Sbjct: 93  ADELTAALPPESRTARVAWLVPKNVPPQKMACVVHLAGTGDHT 135


>At4g14920.1 68417.m02292 PHD finger transcription factor, putative
          Length = 1055

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 142 GSGPEGHPRVYINLDKPGDHSCGYCG 65
           G+G  G   V +  D P D +CG CG
Sbjct: 634 GAGNIGFCSVDVIADDPNDDACGICG 659


>At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 248

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
 Frame = -2

Query: 349 LRSTPVLCRTLTNK-IEDISTHTGQKWDSDDYRLVRFTNA-----PKQVNPNWAVNLIAE 188
           + +T  +CR   N  + + +   G  ++ D+ R  RF        P ++  +W  NLI +
Sbjct: 171 IHNTCPICRFEVNLGVSESNVDEGGSYNIDNDRSNRFRTRVCSLWPLRMMIDWVHNLIGK 230

Query: 187 IPPKEV 170
           IPP ++
Sbjct: 231 IPPPDI 236


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,548,874
Number of Sequences: 28952
Number of extensions: 192706
Number of successful extensions: 447
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)