Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d05f
         (536 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71262-3|CAA95810.1|  140|Caenorhabditis elegans Hypothetical pr...   113   6e-26
Z68160-2|CAA92290.2|  403|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AC087794-2|AAG53703.2|  840|Caenorhabditis elegans Hypothetical ...    28   4.9  
AC024776-22|AAK68478.3|  701|Caenorhabditis elegans Hypothetical...    27   6.5  
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF000265-6|AAB52944.1|  150|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z71262-3|CAA95810.1|  140|Caenorhabditis elegans Hypothetical
           protein F22D6.4 protein.
          Length = 140

 Score =  113 bits (273), Expect = 6e-26
 Identities = 53/90 (58%), Positives = 63/90 (70%), Gaps = 1/90 (1%)
 Frame = +2

Query: 167 TLTNKIEDISTHTGQKWDSDDYRLVRFTNAPKQVNPNWAVNLIAEIPPKEVTE-RVVWCD 343
           T  N   D  THTGQ WD  DYRL RF  + K VNPN A++LI + PP++  + RVV+CD
Sbjct: 33  TKNNAQFDKVTHTGQAWDQSDYRLQRFDISKKSVNPNVAMHLIDQRPPEDCGDKRVVFCD 92

Query: 344 GGSGPEGHPRVYINLDKPGDHSCGYCGLRF 433
           GG    GHP+VYINLDKPG H+CGYCG RF
Sbjct: 93  GGHPALGHPKVYINLDKPGVHACGYCGNRF 122


>Z68160-2|CAA92290.2|  403|Caenorhabditis elegans Hypothetical
           protein D1046.2 protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 404 HSCGYCGLRFIKKTG 448
           HSC  CG+ FI KTG
Sbjct: 121 HSCENCGMEFITKTG 135


>AC087794-2|AAG53703.2|  840|Caenorhabditis elegans Hypothetical
           protein Y32G9A.6 protein.
          Length = 840

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
 Frame = +2

Query: 149 TPVLCRTLTNKIE--DISTHTG---QKWDSDDYRLVRFTNAPKQVNP-NWAVNLIAEIPP 310
           TP+LC  +  KIE  D   +TG   +  D      + +     Q++  NWA+N   E+  
Sbjct: 72  TPLLCALMAGKIENADFLANTGADAECHDEQGRNALHWAVVCGQLDSLNWAINKNVEVNA 131

Query: 311 KEVTER-----VVWCDGGSGPEGHPRVYINLDKPG 400
           K+  +R        C     PE    + I L K G
Sbjct: 132 KDQYQRCTPLHYATCSEDIAPEVSQAILITLLKHG 166


>AC024776-22|AAK68478.3|  701|Caenorhabditis elegans Hypothetical
           protein Y41D4B.4 protein.
          Length = 701

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -1

Query: 506 LQIIQVKRLKDDLDSSNFNDQFFL*ILIHSIHMNGHLVYLN*YTLVDDPLGHY-LHHTKQ 330
           L ++ V  L +D DS +   + F    +H    N     L  + LV+    +   +HTK+
Sbjct: 470 LGVLYVDTLLEDEDSGHREAKIFATRFLHDNQNNVQAKLLKVHVLVNGVSRNPDANHTKE 529

Query: 329 LFQLL 315
           LFQLL
Sbjct: 530 LFQLL 534


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
            C06B8.7 protein.
          Length = 3118

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 110  IMTSCSKLKMLRSTPVLCRTLTNKIEDISTHTGQKWDSDDY-RLVRFTNAPKQ 265
            ++ SC +   +R+  V+CR L  + +++      +WD + + R+++    P+Q
Sbjct: 2015 VVPSCDRQFTIRNAQVVCRELGLQTQNVYHWLTPRWDYNPHVRILKTYMEPRQ 2067


>AF000265-6|AAB52944.1|  150|Caenorhabditis elegans Hypothetical
           protein C18E3.4 protein.
          Length = 150

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 7/24 (29%), Positives = 19/24 (79%)
 Frame = -3

Query: 72  RFKYVGTYLQGINLTLKKKSENFV 1
           + K++  ++QG+N+T +KK++ ++
Sbjct: 125 KLKFIKNFVQGMNMTFQKKNQIYI 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,276,862
Number of Sequences: 27780
Number of extensions: 234155
Number of successful extensions: 489
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)