Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d05f
         (536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    28   0.070
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   6.0  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 27.9 bits (59), Expect = 0.070
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 188 DISTHTGQKWDSDDYRLV-RFTNAPKQVNPNWAVNLIAEIPPKEVTERVVW 337
           D++T     W++D Y+L+ R      + N N  V +  E+    VT++ V+
Sbjct: 119 DVATKEPPPWETDSYKLIGRIAAGEGRFNTNTEVVINTEVKSIPVTKKGVY 169


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 397 WFI*INIHSWMTLWATTS 344
           W   + +HSWMTL  T S
Sbjct: 85  WTSVMELHSWMTLMWTDS 102


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 420 QYPHEWSPGLSKL 382
           QYP +W  G+ KL
Sbjct: 97  QYPWQWGLGICKL 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,532
Number of Sequences: 438
Number of extensions: 2852
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)