Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d04r
         (624 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    27   0.17 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    27   0.17 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    27   0.17 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    27   0.17 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    27   0.17 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    27   0.17 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           27   0.17 
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    27   0.17 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    27   0.17 
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    23   2.7  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   6.3  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 58  SCSLADXNTWXTVXSPRGTSSVRSAARLT--IDVGSASNITPPSQISSKASITAS 216
           SC  AD  +   V SP+  S+  +  R T  +   S SN T  S ++S  S++ S
Sbjct: 98  SCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTS 152


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 58  SCSLADXNTWXTVXSPRGTSSVRSAARLT--IDVGSASNITPPSQISSKASITAS 216
           SC  AD  +   V SP+  S+  +  R T  +   S SN T  S ++S  S++ S
Sbjct: 98  SCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTS 152


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 58  SCSLADXNTWXTVXSPRGTSSVRSAARLT--IDVGSASNITPPSQISSKASITAS 216
           SC  AD  +   V SP+  S+  +  R T  +   S SN T  S ++S  S++ S
Sbjct: 98  SCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTS 152


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 58  SCSLADXNTWXTVXSPRGTSSVRSAARLT--IDVGSASNITPPSQISSKASITAS 216
           SC  AD  +   V SP+  S+  +  R T  +   S SN T  S ++S  S++ S
Sbjct: 98  SCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTS 152


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 58  SCSLADXNTWXTVXSPRGTSSVRSAARLT--IDVGSASNITPPSQISSKASITAS 216
           SC  AD  +   V SP+  S+  +  R T  +   S SN T  S ++S  S++ S
Sbjct: 98  SCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTS 152


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 58  SCSLADXNTWXTVXSPRGTSSVRSAARLT--IDVGSASNITPPSQISSKASITAS 216
           SC  AD  +   V SP+  S+  +  R T  +   S SN T  S ++S  S++ S
Sbjct: 54  SCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTS 108


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 58  SCSLADXNTWXTVXSPRGTSSVRSAARLT--IDVGSASNITPPSQISSKASITAS 216
           SC  AD  +   V SP+  S+  +  R T  +   S SN T  S ++S  S++ S
Sbjct: 98  SCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTS 152


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 58  SCSLADXNTWXTVXSPRGTSSVRSAARLT--IDVGSASNITPPSQISSKASITAS 216
           SC  AD  +   V SP+  S+  +  R T  +   S SN T  S ++S  S++ S
Sbjct: 98  SCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTS 152


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 58  SCSLADXNTWXTVXSPRGTSSVRSAARLT--IDVGSASNITPPSQISSKASITAS 216
           SC  AD  +   V SP+  S+  +  R T  +   S SN T  S ++S  S++ S
Sbjct: 98  SCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTS 152


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 90  HCLXSQGHVLGAQRCPAYDRRGISIQYHTAVADLI 194
           +C  + GH+LG+   P        I+Y   ++ LI
Sbjct: 24  NCHYTSGHLLGSSSLPLRSFYRSRIRYQGRISSLI 58


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +2

Query: 62  APLLIXIPGXLFXLPGARPRCAALPG 139
           AP +    G    LPG   RC   PG
Sbjct: 34  APSICGEHGHCVNLPGVGHRCQCQPG 59


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,590
Number of Sequences: 336
Number of extensions: 2501
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)