Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d04r
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces pom...    89   5e-19
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    26   3.8  
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc...    25   8.9  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    25   8.9  

>SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 190

 Score = 89.0 bits (211), Expect = 5e-19
 Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 8/146 (5%)
 Frame = -2

Query: 548 TLYIVKGMCILDYEGNRILXKYY--------DKDVLPTTKEQKAFEKNLFNKTHRANAEI 393
           TLY V    ILD  G RI  KYY        +  V  + KE+K FEK LF KT +   +I
Sbjct: 4   TLYAVNAFLILDSSGKRIFTKYYAPPHLKEGEGGVFNSVKEEKTFEKGLFEKTWKTQNDI 63

Query: 392 IXLDGLTXVYKSNVDLFFYVMGSSXENELILQSVLNALXESVSLXXXXXXXXXXXXXXLD 213
           +  DG   V  + +D+ FY++G   ENE++L   L ++ +++ L               D
Sbjct: 64  LTYDGKLVVMLTVMDVIFYIVGGMEENEVMLYECLRSIRDALELLFKYVPDKRTLLENYD 123

Query: 212 AVMLAFDEICDGGVILDADPTSIVSR 135
            +++  DE  D GVIL+ +P  I +R
Sbjct: 124 QLVIVVDETIDDGVILETEPALIAAR 149


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -2

Query: 479 DKDVLPTTKEQKAFEKNLFNKTHRANAEIIXLDGLTXVYKSNV 351
           D+D +P  K + + +KN+ N + +  A+++   GL    K+ V
Sbjct: 55  DEDDIPIRKRRASSKKNMSNSSSKKRAKVMGNGGLKNGKKTAV 97


>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 25/136 (18%), Positives = 52/136 (38%), Gaps = 1/136 (0%)
 Frame = -2

Query: 539 IVKGMCILDYEGNRILXKYYDK-DVLPTTKEQKAFEKNLFNKTHRANAEIIXLDGLTXVY 363
           +++ + I +  G   L KYY   D     + +    + +  +  +  A  +  +    VY
Sbjct: 1   MIQFILIQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVY 60

Query: 362 KSNVDLFFYVMGSSXENELILQSVLNALXESVSLXXXXXXXXXXXXXXLDAVMLAFDEIC 183
           +    L+F     S +N+L +  +++   E +                   V    DEI 
Sbjct: 61  RRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFY-KVSAILDEII 119

Query: 182 DGGVILDADPTSIVSR 135
            GG I +++  S++ R
Sbjct: 120 LGGEIGESNKKSVLER 135


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 572 MEGSLFEPTLYI-VKGMCILDYEGNRILXKYYDKDVLPTTKEQKAFEKNLFNKTHRAN 402
           M GS   P  Y  V   C  ++E   +L + Y+K++ P+T E K  EK  F  +   N
Sbjct: 325 MGGSYHFPNFYKKVDEYCGTEWE--TMLSRLYNKELTPSTDENK-LEKLCFKASWALN 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,288,942
Number of Sequences: 5004
Number of extensions: 39230
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)