Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d04r
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0646 + 12606569-12606582,12608702-12608750,12609387-126095... 111 6e-25
05_05_0116 - 22496535-22496576,22496974-22497058,22497468-224975... 97 8e-21
01_06_1282 + 35972234-35972244,35972451-35972522,35972714-359727... 97 8e-21
09_02_0437 - 9399982-9401253 29 4.0
01_01_0132 - 1197988-1198206,1198255-1198356,1198518-1198821,119... 28 5.2
02_01_0777 - 5785295-5787370,5787723-5788769 28 6.9
10_01_0299 - 3101028-3102022,3103004-3103177,3105272-3106190 27 9.2
09_04_0471 - 17878271-17878906,17880373-17880564,17880761-17881015 27 9.2
01_05_0090 + 18038219-18038421,18039365-18039488,18040229-180403... 27 9.2
>02_02_0646 +
12606569-12606582,12608702-12608750,12609387-12609546,
12610372-12610519,12610610-12610687,12611935-12612019,
12612098-12612157
Length = 197
Score = 111 bits (266), Expect = 6e-25
Identities = 67/172 (38%), Positives = 88/172 (51%), Gaps = 6/172 (3%)
Frame = -2
Query: 536 VKGMCILDYEGNRILXKYYDKDVLPTTKEQKAFEKNLFNKTHRANA----EIIXLDGLTX 369
VK + +LD EG R+ KY+ D + + AFEK++F KT + NA EI DG
Sbjct: 27 VKNILLLDSEGKRVAVKYFSDD-WSSNASKLAFEKSVFTKTLKTNARSEAEITLFDGYIV 85
Query: 368 VYKSNVDLFFYVMGSSXENELILQSVLNALXESVSLXXXXXXXXXXXXXXLDAVMLAFDE 189
VYK DL F+V ENELI+ +VL +SV L LD ++L DE
Sbjct: 86 VYKFVQDLHFFVTAGDDENELIIANVLQGFSDSVGLLLRGDVEKRTALENLDLILLCIDE 145
Query: 188 ICDGGVILDADPTSIVSRAALRTED--VPLGXQTVXQVXQSAREQLKWSLLK 39
I DGG+IL+ D +I + A D P QT+ Q +ARE L SLLK
Sbjct: 146 IVDGGIILETDANTIAGKVATNAVDGSAPFSEQTISQALATAREHLARSLLK 197
>05_05_0116 -
22496535-22496576,22496974-22497058,22497468-22497545,
22497656-22497803,22498612-22498771,22499056-22499058
Length = 171
Score = 97.5 bits (232), Expect = 8e-21
Identities = 55/140 (39%), Positives = 76/140 (54%), Gaps = 4/140 (2%)
Frame = -2
Query: 536 VKGMCILDYEGNRILXKYYDKDVLPTTKEQKAFEKNLFNKTHRANA----EIIXLDGLTX 369
VK + +LD EG R+ KYY D PT + AFEK++F KT +A A EI+ DG
Sbjct: 7 VKNILLLDSEGKRVAVKYYTDD-WPTLSAKLAFEKSVFVKTQKATAGAEAEIVMFDGHIV 65
Query: 368 VYKSNVDLFFYVMGSSXENELILQSVLNALXESVSLXXXXXXXXXXXXXXLDAVMLAFDE 189
VYK DL F+V G ENELIL SVL ++V + LD ++L DE
Sbjct: 66 VYKFIQDLHFFVTGGEEENELILASVLQGFTDAVDIILRNNVDKRTALENLDLILLCLDE 125
Query: 188 ICDGGVILDADPTSIVSRAA 129
I DGG++L+ + + I + +
Sbjct: 126 IVDGGIVLETEGSVIAEKVS 145
>01_06_1282 +
35972234-35972244,35972451-35972522,35972714-35972747,
35973247-35973360,35974833-35975036,35975290-35975449,
35976093-35976240,35976345-35976422,35976854-35976938,
35977142-35977213
Length = 325
Score = 97.5 bits (232), Expect = 8e-21
Identities = 53/140 (37%), Positives = 74/140 (52%), Gaps = 4/140 (2%)
Frame = -2
Query: 536 VKGMCILDYEGNRILXKYYDKDVLPTTKEQKAFEKNLFNKTH----RANAEIIXLDGLTX 369
VK + +LD EG R+ KYY D P+ ++AFEK++F KT R AEI+ D
Sbjct: 151 VKNILVLDSEGKRVAVKYYSDD-WPSLSSKQAFEKSVFAKTQKTSARTEAEIVMFDSYFV 209
Query: 368 VYKSNVDLFFYVMGSSXENELILQSVLNALXESVSLXXXXXXXXXXXXXXLDAVMLAFDE 189
VYK DL F+V G ENELIL SVL E++ LD + L DE
Sbjct: 210 VYKFIQDLHFFVTGGDEENELILASVLQGFSEAIDYLLRNKVHRRAALENLDLIFLCLDE 269
Query: 188 ICDGGVILDADPTSIVSRAA 129
+ DGG++L+ D +I+ + +
Sbjct: 270 VVDGGIVLETDAKAILEKVS 289
>09_02_0437 - 9399982-9401253
Length = 423
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Frame = +1
Query: 127 SAARLTIDVGSAS------NITPPSQISSKASITASKFSMXTLRSM 246
SAA LTID GS S + PSQ SS S+ S+ S+ LRS+
Sbjct: 84 SAAALTIDAGSFSLAFLRDDDVLPSQWSSSWSVADSRGSLVLLRSL 129
>01_01_0132 -
1197988-1198206,1198255-1198356,1198518-1198821,
1199221-1199292,1199384-1199420,1199527-1199585,
1199844-1200128,1200293-1200465,1201020-1201213,
1202245-1202374
Length = 524
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 8 YMYRA*VFIFISIRTT*VAPLLIXIPGXLFXLPGARPRCAALPGLRSTWDQHP 166
Y R+ V++F+++ T VA L I + L A+ C A+ W QHP
Sbjct: 285 YGQRSTVYVFVTLCWTVVATLFILLGIFLILNSAAKDTCEAM----DEWAQHP 333
>02_01_0777 - 5785295-5787370,5787723-5788769
Length = 1040
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = -2
Query: 482 YDKDVLPTTKEQKAFEKNLFNKTHRANAE-IIXLDGLTXVYKSNVD--LFFYVMGSSXEN 312
+D++V P+ K Q++FE L HR N + I + GL + + D + ++GS+ N
Sbjct: 771 FDQNVTPSPKPQQSFELILHKILHRDNKDNIEAIQGLLPLAERANDSRVQDLLLGSNMSN 830
Query: 311 ELIL 300
L L
Sbjct: 831 GLAL 834
>10_01_0299 - 3101028-3102022,3103004-3103177,3105272-3106190
Length = 695
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = -2
Query: 539 IVKGMCILDYEGNRILXKYYDKD---VLPTTKEQKAFEKNLFNKTHRANAEIIXLDGLTX 369
IV + L R + +Y+ K+ VL K F K+ K + N+E++ G
Sbjct: 374 IVAVLFTLMMHQKRKMNEYFKKNGGSVLQKVDNVKIFSKDELKKITKNNSEVLGQGGFGK 433
Query: 368 VYKSNVD 348
VYK ++
Sbjct: 434 VYKGTLE 440
>09_04_0471 - 17878271-17878906,17880373-17880564,17880761-17881015
Length = 360
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -2
Query: 185 CDGGVILDADPTSIVSRAALRTEDVPLGXQTVXQVXQSAREQ 60
CDG V++DA PT + AL + V ++ ++ E+
Sbjct: 87 CDGSVLMDATPTMAGEKEALSNINSLRSFDVVDEIKEALEER 128
>01_05_0090 +
18038219-18038421,18039365-18039488,18040229-18040311,
18040401-18040473,18040584-18040688,18040803-18040853,
18041705-18041781,18041879-18042037,18043548-18043692,
18043776-18043884,18043959-18044107,18044175-18044258,
18044784-18044825,18045811-18046014
Length = 535
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/52 (23%), Positives = 21/52 (40%)
Frame = -2
Query: 590 TMVHTTMEGSLFEPTLYIVKGMCILDYEGNRILXKYYDKDVLPTTKEQKAFE 435
T + + F+P Y ++ MC YE K + +L + + FE
Sbjct: 370 THIFAVYGDNFFKPASYTIEAMCAKSYEDTTQRLKEIESKILEKRNDLRQFE 421
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,713,417
Number of Sequences: 37544
Number of extensions: 252229
Number of successful extensions: 597
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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