Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d04r
         (624 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2780|AAF49428.2|  174|Drosophila melanogaster CG3948-PA...   240   1e-63
AB037672-1|BAA90485.1|  174|Drosophila melanogaster nonclathrin ...   240   1e-63
AE014296-2781|AAN11737.1|  163|Drosophila melanogaster CG3948-PC...   233   2e-61
BT011358-1|AAR96150.1|  169|Drosophila melanogaster RE70427p pro...   215   4e-56
AE014296-2782|AAN11738.1|  169|Drosophila melanogaster CG3948-PB...   215   4e-56
AE014298-2611|AAF48765.3| 1039|Drosophila melanogaster CG8146-PA...    30   2.2  

>AE014296-2780|AAF49428.2|  174|Drosophila melanogaster CG3948-PA,
           isoform A protein.
          Length = 174

 Score =  240 bits (587), Expect = 1e-63
 Identities = 114/167 (68%), Positives = 133/167 (79%)
 Frame = -2

Query: 539 IVKGMCILDYEGNRILXKYYDKDVLPTTKEQKAFEKNLFNKTHRANAEIIXLDGLTXVYK 360
           I+KGMCI+D +GNRIL KYYDK++L T KEQKAFEKNLFNKTHR+N EII LDGLT VYK
Sbjct: 8   IIKGMCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDGLTCVYK 67

Query: 359 SNVDLFFYVMGSSXENELILQSVLNALXESVSLXXXXXXXXXXXXXXLDAVMLAFDEICD 180
           SNVDLFFYVMG++ ENELIL SVLN L +S+SL              L+ +MLAFDEICD
Sbjct: 68  SNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLVLENLEIIMLAFDEICD 127

Query: 179 GGVILDADPTSIVSRAALRTEDVPLGXQTVXQVXQSAREQLKWSLLK 39
           GG+ILDADP+S+V R  LR +D+P+  QTV QV QSAREQLKWS+LK
Sbjct: 128 GGIILDADPSSVVKRVDLRNDDIPIAEQTVAQVLQSAREQLKWSILK 174


>AB037672-1|BAA90485.1|  174|Drosophila melanogaster nonclathrin
           coat protein zeta-COP protein.
          Length = 174

 Score =  240 bits (587), Expect = 1e-63
 Identities = 114/167 (68%), Positives = 133/167 (79%)
 Frame = -2

Query: 539 IVKGMCILDYEGNRILXKYYDKDVLPTTKEQKAFEKNLFNKTHRANAEIIXLDGLTXVYK 360
           I+KGMCI+D +GNRIL KYYDK++L T KEQKAFEKNLFNKTHR+N EII LDGLT VYK
Sbjct: 8   IIKGMCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDGLTCVYK 67

Query: 359 SNVDLFFYVMGSSXENELILQSVLNALXESVSLXXXXXXXXXXXXXXLDAVMLAFDEICD 180
           SNVDLFFYVMG++ ENELIL SVLN L +S+SL              L+ +MLAFDEICD
Sbjct: 68  SNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLVLENLEIIMLAFDEICD 127

Query: 179 GGVILDADPTSIVSRAALRTEDVPLGXQTVXQVXQSAREQLKWSLLK 39
           GG+ILDADP+S+V R  LR +D+P+  QTV QV QSAREQLKWS+LK
Sbjct: 128 GGIILDADPSSVVKRVDLRNDDIPIAEQTVAQVLQSAREQLKWSILK 174


>AE014296-2781|AAN11737.1|  163|Drosophila melanogaster CG3948-PC,
           isoform C protein.
          Length = 163

 Score =  233 bits (569), Expect = 2e-61
 Identities = 111/163 (68%), Positives = 129/163 (79%)
 Frame = -2

Query: 527 MCILDYEGNRILXKYYDKDVLPTTKEQKAFEKNLFNKTHRANAEIIXLDGLTXVYKSNVD 348
           MCI+D +GNRIL KYYDK++L T KEQKAFEKNLFNKTHR+N EII LDGLT VYKSNVD
Sbjct: 1   MCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDGLTCVYKSNVD 60

Query: 347 LFFYVMGSSXENELILQSVLNALXESVSLXXXXXXXXXXXXXXLDAVMLAFDEICDGGVI 168
           LFFYVMG++ ENELIL SVLN L +S+SL              L+ +MLAFDEICDGG+I
Sbjct: 61  LFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLVLENLEIIMLAFDEICDGGII 120

Query: 167 LDADPTSIVSRAALRTEDVPLGXQTVXQVXQSAREQLKWSLLK 39
           LDADP+S+V R  LR +D+P+  QTV QV QSAREQLKWS+LK
Sbjct: 121 LDADPSSVVKRVDLRNDDIPIAEQTVAQVLQSAREQLKWSILK 163


>BT011358-1|AAR96150.1|  169|Drosophila melanogaster RE70427p
           protein.
          Length = 169

 Score =  215 bits (525), Expect = 4e-56
 Identities = 102/153 (66%), Positives = 120/153 (78%)
 Frame = -2

Query: 539 IVKGMCILDYEGNRILXKYYDKDVLPTTKEQKAFEKNLFNKTHRANAEIIXLDGLTXVYK 360
           I+KGMCI+D +GNRIL KYYDK++L T KEQKAFEKNLFNKTHR+N EII LDGLT VYK
Sbjct: 8   IIKGMCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDGLTCVYK 67

Query: 359 SNVDLFFYVMGSSXENELILQSVLNALXESVSLXXXXXXXXXXXXXXLDAVMLAFDEICD 180
           SNVDLFFYVMG++ ENELIL SVLN L +S+SL              L+ +MLAFDEICD
Sbjct: 68  SNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLVLENLEIIMLAFDEICD 127

Query: 179 GGVILDADPTSIVSRAALRTEDVPLGXQTVXQV 81
           GG+ILDADP+S+V R  LR +D+P+  QTV QV
Sbjct: 128 GGIILDADPSSVVKRVDLRNDDIPIAEQTVAQV 160


>AE014296-2782|AAN11738.1|  169|Drosophila melanogaster CG3948-PB,
           isoform B protein.
          Length = 169

 Score =  215 bits (525), Expect = 4e-56
 Identities = 102/153 (66%), Positives = 120/153 (78%)
 Frame = -2

Query: 539 IVKGMCILDYEGNRILXKYYDKDVLPTTKEQKAFEKNLFNKTHRANAEIIXLDGLTXVYK 360
           I+KGMCI+D +GNRIL KYYDK++L T KEQKAFEKNLFNKTHR+N EII LDGLT VYK
Sbjct: 8   IIKGMCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTHRSNTEIIMLDGLTCVYK 67

Query: 359 SNVDLFFYVMGSSXENELILQSVLNALXESVSLXXXXXXXXXXXXXXLDAVMLAFDEICD 180
           SNVDLFFYVMG++ ENELIL SVLN L +S+SL              L+ +MLAFDEICD
Sbjct: 68  SNVDLFFYVMGNAYENELILLSVLNCLYDSISLILKKNVEKRLVLENLEIIMLAFDEICD 127

Query: 179 GGVILDADPTSIVSRAALRTEDVPLGXQTVXQV 81
           GG+ILDADP+S+V R  LR +D+P+  QTV QV
Sbjct: 128 GGIILDADPSSVVKRVDLRNDDIPIAEQTVAQV 160


>AE014298-2611|AAF48765.3| 1039|Drosophila melanogaster CG8146-PA
           protein.
          Length = 1039

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -1

Query: 612 Q*KIXNPHNGSHNDGRFSVRTHIVHCQGDVHFGL*RKQNFXQILR*RRPTHN 457
           Q ++  P    HN  +     H++H +    F L  KQ F  I R RR  H+
Sbjct: 696 QQQLEKPPTEHHNQHQPPNNKHVLHSEKKSQFTLNLKQRFCSIFRFRRSNHS 747


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,726,745
Number of Sequences: 53049
Number of extensions: 440546
Number of successful extensions: 925
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2579793750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)