Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d04r
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical pr...   173   9e-44
AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin, mu/m...    31   0.88 

>Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical
           protein F59E10.3 protein.
          Length = 184

 Score =  173 bits (421), Expect = 9e-44
 Identities = 84/175 (48%), Positives = 119/175 (68%), Gaps = 5/175 (2%)
 Frame = -2

Query: 548 TLYIVKGMCILDYEGNRILXKYYDKDVLPTTKEQKAFEKNLFNKTHR-ANAEIIXLDGLT 372
           +LY +KG+ ILD +GNR+L KYYD+    T KEQKAFEK+LF+KT R  +A+I+ LDG+T
Sbjct: 10  SLYSIKGIVILDQDGNRVLAKYYDRTTFGTVKEQKAFEKSLFSKTSRNTSADILLLDGVT 69

Query: 371 XVYKSNVDLFFYVMGSSXENELILQSVLNALXESVSLXXXXXXXXXXXXXXLDAVMLAFD 192
            +Y+SNVDL+FYV+GS+ ENEL L + L  L ++VS+              +D +ML  D
Sbjct: 70  CLYRSNVDLYFYVLGSTRENELFLDATLTCLYDAVSVVLRKNVEKKALIDSMDTIMLIID 129

Query: 191 EICDGGVILDADPTSIVSRAALRTEDVPLGXQTVXQV----XQSAREQLKWSLLK 39
           EICD G+I++ D  ++V R AL++++V    Q+V Q+     +SA EQ KWSLLK
Sbjct: 130 EICDEGIIMETDAQAVVQRTALKSDEVSFSDQSVSQIGFSFMKSANEQFKWSLLK 184


>AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin,
           mu/medium chain (clathrinassociated complex) protein 1
           protein.
          Length = 426

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = -2

Query: 536 VKGMCILDYEGNRILXKYYDKDVLPTTKEQKAFEKNLFNKTHRANAE-IIXLDGLTXVYK 360
           + G+ ILD +GN ++ + Y  DV  +  E+  F   L  K    +A  ++   G++  Y 
Sbjct: 3   ISGLFILDLKGNVVISRNYRGDVDMSCIEK--FMPLLVEKEDEGSASPVLVHQGISYTYI 60

Query: 359 SNVDLFFYVMGSSXENELILQSVLNALXE 273
             ++++   +     N +++ S L  + E
Sbjct: 61  KYMNVYLVTISKKNTNVILVLSALYKIVE 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,819,360
Number of Sequences: 27780
Number of extensions: 229234
Number of successful extensions: 515
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)